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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : gmdA
DDBJ      :gmdA         GDP-mannose 4,6-dehydratase
Swiss-Prot:             

Homologs  Archaea  12/68 : Bacteria  196/915 : Eukaryota  25/199 : Viruses  1/175   --->[See Alignment]
c.2.1
:311 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   17->281 2z1mA PDBj 1e-17 26.5 %
:RPS:PDB   179->285 1c97A PDBj 2e-04 11.2 %
:RPS:SCOP  17->305 1sb8A  c.2.1.2 * 2e-09 16.1 %
:HMM:SCOP  10->309 1db3A_ c.2.1.2 * 5.5e-26 18.7 %
:HMM:PFM   10->226 PF01370 * Epimerase 6.7e-25 17.1 211/238  
:BLT:SWISS 17->281 GM4D_PSEAE 7e-17 24.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20998.1 GT:GENE gmdA GT:PRODUCT GDP-mannose 4,6-dehydratase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 178883..179818 GB:FROM 178883 GB:TO 179818 GB:DIRECTION + GB:GENE gmdA GB:PRODUCT GDP-mannose 4,6-dehydratase GB:NOTE GmdA GB:PROTEIN_ID AAZ20998.1 GB:DB_XREF GI:71061995 GB:GENE:GENE gmdA LENGTH 311 SQ:AASEQ MKKNNSIIIGSGVIGSYLAKFLLSKRQKIIVTSRKRKKAYTNYNKLNIENKIIFEKLNFLKKDEILKLLKKYTPKNIFYFSGQSSLTKSIKLKKVTNDSNYIGAKKILEILHKYELKTNFYKANSGYIFEPNKGLVNIKSKISKNNNPYIQSQIKAHKEVKKFRKKGVNCSSIFFLQVESPLRNNDFFIKKICTHAKLKKNITVGNLNTIRDYSWAPEIVEGIYHLTKIKPRDLMLSSGQGISGYEILKTAYEQNKLDYRKYFSINKKFIRPDEVEVMMGSKKNYEILNKKFKYQIKIGGAKLVKKIFNSI GT:EXON 1|1-311:0| BL:SWS:NREP 1 BL:SWS:REP 17->281|GM4D_PSEAE|7e-17|24.2|265/323| SEG 6->16|siiigsgvigs| SEG 60->71|lkkdeilkllkk| SEG 137->147|nikskisknnn| BL:PDB:NREP 1 BL:PDB:REP 17->281|2z1mA|1e-17|26.5|264/338| RP:PDB:NREP 1 RP:PDB:REP 179->285|1c97A|2e-04|11.2|107/753| HM:PFM:NREP 1 HM:PFM:REP 10->226|PF01370|6.7e-25|17.1|211/238|Epimerase| RP:SCP:NREP 1 RP:SCP:REP 17->305|1sb8A|2e-09|16.1|279/341|c.2.1.2| HM:SCP:REP 10->309|1db3A_|5.5e-26|18.7|299/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 294 OP:NHOMOORG 234 OP:PATTERN --------1-------------------------1--1-11--12--1--211--------------1 -121------------1----1----11111--1-1-11112211----11-1--1-2----2--1---1------------11-11---------------1---------------------------1-----11111---11122222211--------12122122---111--11--------------------------------------------------1----------------------------------------------------------------------------------------------1-----------1-------------------12-------------112-11-------121111-1-1211122122222----2--1-1-11--11-111122--1--1-1-----------------1--1121------------------------------21---------2221121111111111111-2111--1----1-----1----1----111--------------1----1--11-1------112--3--11111-1---------------------1--11-------1----------------------------------------------------------------------------------------------------------------------------11111------------------------------------111--11-------111---------1-----------------1111---1111--11111111-----------------------------------------------3- 11--11----1------------------------------------------1-----------------------------------------------1--------2------------------------------------------------13111-1----11611----------4132-21------- -----------------------1------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 294 STR:RPRED 94.5 SQ:SECSTR ################HHHHHHHHTTcEEEEEcccccTTTHHHHHTTcTTTEEEccccTTcHHHHHHHHHHHcccEEEEccccccHHHHTTcHHHHHHHHTHHHHHHHHHHHHHcTTcEEEEEEEGGGGcccccccccTTcccccccHHHHHHHHHHHHHHHHHHcccEEEEEEcccEccccTTTcEEEEcccEEEHHHHHHHHHHHTcccccccEEEEccccccccccHHHHHHHHHHHTHHHHHHHHHHHHHHTcEEEcTTcHHHHTccTTcEEEEccTTGGGHHHcTTccccccccHHHHHHHHHHH# DISOP:02AL 311-312| PSIPRED ccccEEEEEcccHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHcccccEEEEcccccHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHHHHcccccEEEcccccEEcHHHHHHHHHHHHHHHcccccEEEEccccEEEHHHHHHHHHHHccccccEEEEEcccccccccHHHHHcccccHHHHHHHHcccccccHHHHHHHHHHHc //