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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : greA
DDBJ      :greA         Transcription elongation factor
Swiss-Prot:GREA_PELUB   RecName: Full=Transcription elongation factor greA;AltName: Full=Transcript cleavage factor greA;

Homologs  Archaea  0/68 : Bacteria  832/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.2.1d.26.1
:158 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   39->132 1grjA PDBj 8e-30 62.8 %
:RPS:PDB   26->157 3bmbA PDBj 5e-32 23.6 %
:RPS:SCOP  3->79 1grjA1  a.2.1.1 * 1e-18 50.6 %
:RPS:SCOP  82->155 2etnA2  d.26.1.2 * 7e-19 31.1 %
:HMM:SCOP  2->79 1grjA1 a.2.1.1 * 2e-26 59.0 %
:HMM:SCOP  80->158 1grjA2 d.26.1.2 * 3.7e-21 48.1 %
:RPS:PFM   26->74 PF03449 * GreA_GreB_N 5e-10 61.2 %
:RPS:PFM   86->156 PF01272 * GreA_GreB 8e-14 54.9 %
:HMM:PFM   3->74 PF03449 * GreA_GreB_N 4.7e-33 59.2 71/74  
:HMM:PFM   83->157 PF01272 * GreA_GreB 2.6e-27 49.3 75/77  
:BLT:SWISS 1->158 GREA_PELUB 4e-77 100.0 %
:PROS 17->48|PS00829|GREAB_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20927.1 GT:GENE greA GT:PRODUCT Transcription elongation factor GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 114400..114876 GB:FROM 114400 GB:TO 114876 GB:DIRECTION + GB:GENE greA GB:PRODUCT Transcription elongation factor GB:PROTEIN_ID AAZ20927.1 GB:DB_XREF GI:71061924 GB:GENE:GENE greA LENGTH 158 SQ:AASEQ MDKEPITADGLESLKEELIFLKEKKRPQIVAAISEARSHGDLKENAEYHAAKEEQSHNEGRITEINDIIARANVIDVTKMSNDGKVIFGSTVDLENLDTGEKITYKIVGKDEADLQKKLIFFQSPIGRGLIGKNKNDLVEIKTPAGVKNFEIKDVKYV GT:EXON 1|1-158:0| SW:ID GREA_PELUB SW:DE RecName: Full=Transcription elongation factor greA;AltName: Full=Transcript cleavage factor greA; SW:GN Name=greA; OrderedLocusNames=SAR11_0103; SW:KW Complete proteome; DNA-binding; Transcription;Transcription regulation. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->158|GREA_PELUB|4e-77|100.0|158/158| GO:SWS:NREP 3 GO:SWS GO:0003677|"GO:DNA binding"|DNA-binding| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0045449|"GO:regulation of transcription"|Transcription regulation| PROS 17->48|PS00829|GREAB_1|PDOC00651| SEG 11->25|leslkeeliflkekk| BL:PDB:NREP 1 BL:PDB:REP 39->132|1grjA|8e-30|62.8|94/151| RP:PDB:NREP 1 RP:PDB:REP 26->157|3bmbA|5e-32|23.6|123/135| RP:PFM:NREP 2 RP:PFM:REP 26->74|PF03449|5e-10|61.2|49/73|GreA_GreB_N| RP:PFM:REP 86->156|PF01272|8e-14|54.9|71/78|GreA_GreB| HM:PFM:NREP 2 HM:PFM:REP 3->74|PF03449|4.7e-33|59.2|71/74|GreA_GreB_N| HM:PFM:REP 83->157|PF01272|2.6e-27|49.3|75/77|GreA_GreB| GO:PFM:NREP 6 GO:PFM GO:0003677|"GO:DNA binding"|PF03449|IPR001437| GO:PFM GO:0003711|"GO:transcription elongation regulator activity"|PF03449|IPR001437| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF03449|IPR001437| GO:PFM GO:0003677|"GO:DNA binding"|PF01272|IPR001437| GO:PFM GO:0003711|"GO:transcription elongation regulator activity"|PF01272|IPR001437| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01272|IPR001437| RP:SCP:NREP 2 RP:SCP:REP 3->79|1grjA1|1e-18|50.6|77/78|a.2.1.1| RP:SCP:REP 82->155|2etnA2|7e-19|31.1|74/79|d.26.1.2| HM:SCP:REP 2->79|1grjA1|2e-26|59.0|78/0|a.2.1.1|1/1|GreA transcript cleavage protein, N-terminal domain| HM:SCP:REP 80->158|1grjA2|3.7e-21|48.1|79/79|d.26.1.2|1/1|FKBP-like| OP:NHOMO 1156 OP:NHOMOORG 834 OP:PATTERN -------------------------------------------------------------------- 122-1-1111111111111-111111111111-111111111--1--11---11111111--1-111-11-111111111111-----111111111-121112111111----------11111111111111111111111112-------------------------------------11122--111111111111111111111111111111111121111111211111111111111111111122222222222222221221111111111111111111111111111111111111111111111111111111222111111211111111211112221111111111111111---111111111111121111111111111111111111-11111111111111111111111111111111111111111111111122222211111111111111111111111111111112212222222222222222222222222222222222222222222222122212322233212222222222222211111111111111323323212233222121111111111111111111121111112222222222122222222223222223221-1111111111122222222222222222-222222222222222222222222222222222222222222222222222212222222122221112111111111122222222222222222222222212111222222222222222222211111111122222222222222222222222221111111111111111111111111111-1-1111111111111111---111111111111- --------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 133 STR:RPRED 84.2 SQ:SECSTR #########################ccccEEEHHHHHHHHHHHHcGGGTTcHHHHHHHHHHHHHHHHHHHTcEEEcGGGccTTccccTTcEEEEEETTTccEEEEEEEcGGGcccTTTEEETTcHHHHHHTTccTTcEEEEEETTTEEEEEEEEEEEc DISOP:02AL 158-159| PSIPRED ccEEEEcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcEEEcccccccccEEEEccEEEEEEcccccEEEEEEEcHHHcccccccEEEccHHHHHHcccccccEEEEEccccEEEEEEEEEEEc //