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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : hemB
DDBJ      :hemB         delta-aminolevulinic acid dehydratase
Swiss-Prot:             

Homologs  Archaea  56/68 : Bacteria  749/915 : Eukaryota  180/199 : Viruses  0/175   --->[See Alignment]
c.1.10
:329 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   26->329 1b4kA PDBj 1e-81 50.2 %
:RPS:PDB   10->321 1b4eA PDBj 1e-85 43.0 %
:RPS:SCOP  10->329 1aw5A  c.1.10.3 * e-105 31.9 %
:HMM:SCOP  5->331 1b4eA_ c.1.10.3 * 1.2e-127 54.3 %
:RPS:PFM   10->321 PF00490 * ALAD 2e-91 55.5 %
:HMM:PFM   7->326 PF00490 * ALAD 8.7e-139 55.0 318/324  
:BLT:SWISS 9->329 HEM2_BRAJA e-102 54.7 %
:PROS 248->260|PS00169|D_ALA_DEHYDRATASE

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21857.1 GT:GENE hemB GT:PRODUCT delta-aminolevulinic acid dehydratase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 1021179..1022168 GB:FROM 1021179 GB:TO 1022168 GB:DIRECTION + GB:GENE hemB GB:PRODUCT delta-aminolevulinic acid dehydratase GB:PROTEIN_ID AAZ21857.1 GB:DB_XREF GI:71062854 GB:GENE:GENE hemB LENGTH 329 SQ:AASEQ MITGNYPNLRLRRSRKNDWSRRLVQENSLSSSDFILPIFLIDGKNIKQSIKTMPDVYRYTIDKLGIIVDRAIKSKIPMVALFPYTNKTKKNEIGSEALNEDNLVCKAIRYIKKRYKNEIGIMCDVALDPYTSHGHDGLIKSGYVLNDETIEVLINQSLLQAEIGCDILAPSDMMDGRIGKIRKALDKEGHEMVQLLSYAVKYASSFYGPFRDAVGSKGLLKGDKKNYQMDFRNSNEAIREVALDIKEGADMVMVKPGMPYLDIIKTVKDNFKIPVLAYQVSGEYSLLSNSIKKGLIDKNSVLESLIAFKRAGANAIVSYYADRIEDLIK GT:EXON 1|1-329:0| BL:SWS:NREP 1 BL:SWS:REP 9->329|HEM2_BRAJA|e-102|54.7|320/353| PROS 248->260|PS00169|D_ALA_DEHYDRATASE|PDOC00153| BL:PDB:NREP 1 BL:PDB:REP 26->329|1b4kA|1e-81|50.2|303/326| RP:PDB:NREP 1 RP:PDB:REP 10->321|1b4eA|1e-85|43.0|307/323| RP:PFM:NREP 1 RP:PFM:REP 10->321|PF00490|2e-91|55.5|310/323|ALAD| HM:PFM:NREP 1 HM:PFM:REP 7->326|PF00490|8.7e-139|55.0|318/324|ALAD| GO:PFM:NREP 3 GO:PFM GO:0004655|"GO:porphobilinogen synthase activity"|PF00490|IPR001731| GO:PFM GO:0033014|"GO:tetrapyrrole biosynthetic process"|PF00490|IPR001731| GO:PFM GO:0046872|"GO:metal ion binding"|PF00490|IPR001731| RP:SCP:NREP 1 RP:SCP:REP 10->329|1aw5A|e-105|31.9|304/326|c.1.10.3| HM:SCP:REP 5->331|1b4eA_|1.2e-127|54.3|322/0|c.1.10.3|1/1|Aldolase| OP:NHOMO 1081 OP:NHOMOORG 985 OP:PATTERN 11-1-11111111111-1111111111111111111111111111111111111-------111--11 1111111111111111111-111111111111111111111111111111111111111111111111111--------111111111----1------111111111111111111111111111111111111111111---11232122211111111112111321111111111111111111---11111111111111111111221111111111111111111111111111111111111111-------------11---------------------------------------------1---------11111111111111111111111211---1-11111111-11111-1-111111111-----111111111211211111111111-1121111111111111111111111111111111111111111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111222221122221211211--11111------21111111111111111-11111111111111111111121111111111111111111111111111111111111111111--1111111111111212111111-----11111111121111111111122212111111111111111111111111111111111111111111111111-111111---------------------------------------11-----111 11--111-1---11111111111-1111111113211111111111111111111111111111-11111111111111111111111-12111111111111211-12-2121211111111122111382-12311111112--111-11-111211221121111111--121111K111112133121112111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 329 STR:RPRED 100.0 SQ:SECSTR cTTccTTTccGGGGcccHHHHHHHccccccGGGEEEEEEEEccccccEEcTTcTTcEEEEGGGHHHHHHHHHHTTccEEEEEEEcccGGccTTcGGGGcTTcHHHHHHHHHHHHcTTTcEEEEEEccTTTccccccccEETTEEcHHHHHHHHHHHHHHHHHHTccEEEEccccTTHHHHHHHHHHHTTcTTcEEccccEEcccGGGHHHHHHHccccHHccccTTTcccTTcHHHHHHHHHHHHHTTcccEEEEccGGGHHHHHHHHHHccccEEEEccHHHHHHHHHHHHTTcccHHHHHHHHHHHHHTTccEEEcTTHHHHHHHHH DISOP:02AL 1-4| PSIPRED cccccccccccHHccccHHHHHHHHcccccHHHcEEEEEEEccccccccccccccEEEccHHHHHHHHHHHHHccccEEEEEccccccccccccHHHcccccHHHHHHHHHHHHccccEEEEEEEcccccccccccEEEEccEEccHHHHHHHHHHHHHHHHHcccEEcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHcccccccccccEEEcccccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccEEHHHHHHHHHHHHc //