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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : hemC
DDBJ      :hemC         hydroxymethylbilane synthase
Swiss-Prot:             

Homologs  Archaea  56/68 : Bacteria  748/915 : Eukaryota  184/199 : Viruses  0/175   --->[See Alignment]
c.94.1d.50.2
:307 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->297 1pdaA PDBj 3e-44 37.4 %
:RPS:PDB   4->300 3ecrB PDBj 2e-72 28.7 %
:RPS:SCOP  3->220 1ah5A1  c.94.1.1 * 3e-62 40.4 %
:RPS:SCOP  223->300 1ah5A2  d.50.2.1 * 4e-14 26.9 %
:HMM:SCOP  3->222 1pdaA1 c.94.1.1 * 4.6e-69 44.7 %
:HMM:SCOP  223->305 1gtkA2 d.50.2.1 * 8.2e-16 33.7 %
:RPS:PFM   8->218 PF01379 * Porphobil_deam 3e-48 46.6 %
:RPS:PFM   231->297 PF03900 * Porphobil_deamC 5e-08 37.3 %
:HMM:PFM   5->220 PF01379 * Porphobil_deam 1.9e-76 51.6 213/214  
:HMM:PFM   231->299 PF03900 * Porphobil_deamC 5.2e-16 33.3 69/76  
:BLT:SWISS 4->297 HEM3_SYNWW 2e-57 40.9 %
:PROS 234->250|PS00533|PORPHOBILINOGEN_DEAM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21132.1 GT:GENE hemC GT:PRODUCT hydroxymethylbilane synthase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(306635..307558) GB:FROM 306635 GB:TO 307558 GB:DIRECTION - GB:GENE hemC GB:PRODUCT hydroxymethylbilane synthase GB:PROTEIN_ID AAZ21132.1 GB:DB_XREF GI:71062129 GB:GENE:GENE hemC LENGTH 307 SQ:AASEQ MKNRKIIIGSRGSKLALIYAEKAREKILKHSKDFGIEEVIIKEIVTKGDQVQDKRLSEVGGKGLFSKTIEVELLEKKIDIAVHALKDMPSEETRGLLTDCFLERNDPREILISKDNKHLKDLASNSIIGTSSYRREFQIKKIRDDLNCKLIRGNVDTRIRKLKENLYDAIILSYAGIDSLGLNQNISQTFSTSEIIPCAGQGVIALQCRDNDESLIELLKQVDHQSTHSSIKAERNVLKVLEGDCETAVGAFANIEGNKINLEVELFSLDGSKRFYLKSSESVNKAEELGIEMGKTLKKMSNNSYKK GT:EXON 1|1-307:0| BL:SWS:NREP 1 BL:SWS:REP 4->297|HEM3_SYNWW|2e-57|40.9|291/306| PROS 234->250|PS00533|PORPHOBILINOGEN_DEAM|PDOC00461| SEG 36->45|ieeviikeiv| BL:PDB:NREP 1 BL:PDB:REP 8->297|1pdaA|3e-44|37.4|278/296| RP:PDB:NREP 1 RP:PDB:REP 4->300|3ecrB|2e-72|28.7|279/310| RP:PFM:NREP 2 RP:PFM:REP 8->218|PF01379|3e-48|46.6|208/214|Porphobil_deam| RP:PFM:REP 231->297|PF03900|5e-08|37.3|67/75|Porphobil_deamC| HM:PFM:NREP 2 HM:PFM:REP 5->220|PF01379|1.9e-76|51.6|213/214|Porphobil_deam| HM:PFM:REP 231->299|PF03900|5.2e-16|33.3|69/76|Porphobil_deamC| GO:PFM:NREP 4 GO:PFM GO:0004418|"GO:hydroxymethylbilane synthase activity"|PF01379|IPR000860| GO:PFM GO:0033014|"GO:tetrapyrrole biosynthetic process"|PF01379|IPR000860| GO:PFM GO:0004418|"GO:hydroxymethylbilane synthase activity"|PF03900|IPR000860| GO:PFM GO:0033014|"GO:tetrapyrrole biosynthetic process"|PF03900|IPR000860| RP:SCP:NREP 2 RP:SCP:REP 3->220|1ah5A1|3e-62|40.4|203/205|c.94.1.1| RP:SCP:REP 223->300|1ah5A2|4e-14|26.9|78/94|d.50.2.1| HM:SCP:REP 3->222|1pdaA1|4.6e-69|44.7|217/217|c.94.1.1|1/1|Periplasmic binding protein-like II| HM:SCP:REP 223->305|1gtkA2|8.2e-16|33.7|83/0|d.50.2.1|1/1|Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain| OP:NHOMO 1070 OP:NHOMOORG 988 OP:PATTERN 11-1-11111111111-1111111111111111111111111111111111111-------111--11 1111111111111111111-111111111111111111111111111111111111111111111112211--------111111111----1------111111111111111111-------11111111111111111---11111111111111111111111111111111111111111111---11111111111111111111111111111111111111111111111111111111111111-------------11---------------------------------------------1---------11111111111111111111111211---1111111111-11111-1-111111111-----1-1111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111---11111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-----11111111111111111111111111111111111111111111111111111111111111111111111111-111111---------------------------------------11-----111 11--111-1---1111211123232321111113211111111111112211211111111111111111111111111111111111-12121121-11111231-11-211124-1121111121413E2-11111111111111212111111112211121-11111--111221G1111131221111111131 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 296 STR:RPRED 96.4 SQ:SECSTR ##cccEEEEEcccHHHHHHHHHHHHHHHHHcTTc##TEEEEEEcccHTTccEEEEEccTTccHHHHHHHHHHHHTTcccEEEEEGGGccccccTTEEEEEEcccccccEEEEEcGTccTTTccTTcEEEcccHHHHHHHHHHcTTcEEEcccccHHHHHHHHHHccccEEEEEHHHHHHTTcGGGccEEccTTTccccTTTTcEEEEEETTcHHHHHHHGGGccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEETTEEEEEEEEEcTTcccccTTccHHHHHHHHHHHHHHHHHHHHT####### DISOP:02AL 1-2, 303-307| PSIPRED ccccEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEccccccccHHHHcccEEEHHHHHHHHHcccccEEEEcccccccccccccEEEEEcccccccEEEEEcccccHHHcccccEEEEcHHHHHHHHHHHccccEEEEccccHHHHHHHHHcccccHHHHHHHHHHHcccccccEEccccccccccccccEEEEEEEccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccEEEEEEEEEcccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHcccccc //