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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : hemD
DDBJ      :hemD         Uroporphyrinogen III synthase HEM4
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  31/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.113.1
:232 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   1->215 3d8nA PDBj 4e-06 15.7 %
:RPS:SCOP  2->58 1jr2A  c.113.1.1 * 1e-04 32.7 %
:RPS:SCOP  46->95 1wd7A  c.113.1.1 * 9e-04 32.0 %
:HMM:SCOP  1->233 1jr2A_ c.113.1.1 * 8.7e-40 29.4 %
:HMM:PFM   18->216 PF02602 * HEM4 1.5e-32 27.1 192/229  
:BLT:SWISS 59->213 GLMU_PROM5 7e-06 27.6 %
:PROS 21->30|PS00142|ZINC_PROTEASE

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21131.1 GT:GENE hemD GT:PRODUCT Uroporphyrinogen III synthase HEM4 GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(305935..306633) GB:FROM 305935 GB:TO 306633 GB:DIRECTION - GB:GENE hemD GB:PRODUCT Uroporphyrinogen III synthase HEM4 GB:PROTEIN_ID AAZ21131.1 GB:DB_XREF GI:71062128 GB:GENE:GENE hemD LENGTH 232 SQ:AASEQ MHILFTRPLEDCHEMILKFQSLGHEISHLPLINIEGLKYEAPNYSEFKAIIFTSANAVKFLDIKNIDKKLKCFCVGSATEKKARSVGFQNVFAAEGNVSNLKELILQNFKPSDGKLIYISGEIISSDLDKELISSGYTIERLINYRANPIEKYDESFIEKLKLKMPEITYIYSQNSAINFLKVIKNYQLETLWMNTNLMCIGEKTSSILNEIKWKKIFLFNPGEEEFLLYKI GT:EXON 1|1-232:0| BL:SWS:NREP 1 BL:SWS:REP 59->213|GLMU_PROM5|7e-06|27.6|145/447| PROS 21->30|PS00142|ZINC_PROTEASE|PDOC00129| RP:PDB:NREP 1 RP:PDB:REP 1->215|3d8nA|4e-06|15.7|210/250| HM:PFM:NREP 1 HM:PFM:REP 18->216|PF02602|1.5e-32|27.1|192/229|HEM4| RP:SCP:NREP 2 RP:SCP:REP 2->58|1jr2A|1e-04|32.7|55/260|c.113.1.1| RP:SCP:REP 46->95|1wd7A|9e-04|32.0|50/254|c.113.1.1| HM:SCP:REP 1->233|1jr2A_|8.7e-40|29.4|231/260|c.113.1.1|1/1|HemD-like| OP:NHOMO 31 OP:NHOMOORG 31 OP:PATTERN -------------------------------------------------------------------- -----------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-111111111----------------------1-1------------11-1----1------------------111-11--1111----------------11111------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 212 STR:RPRED 91.4 SQ:SECSTR cEEEEcccTTH#HHHHHHHHHTTcEEEEccccccEEcTTHHHHTTcccEEEEccHHHHHHTTcccHHHHHHcEEEEccHEHHHHHHHHTTcEcccEEccccGGGGGGGcccccEEEEEEccccccHHHHHHHHHTTEEEEEEccEEccccHHHHHHHHHHHHTTcccEEEEccHHHHHHHHHHcccHHH##HHHHHHHEEEcHHHHHHHHHTTcc################# DISOP:02AL 232-233| PSIPRED cEEEEEccHHHHHHHHHHHHHccccEEEEccEEEEEcccHHcccccccEEEEEcHHHHHHHHHcccccccEEEEEcHHHHHHHHHccccccccccccHHHHHHHHHHccccccccEEEEEEcccHHHHHHHHHHcccEEEEEEEEEcccccccHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHccccHHHHcccEEEEcHHHHHHHHHccccEEEEcccccHHHHHHcc //