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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : hemE
DDBJ      :hemE         uroporphyrinogen decarboxylase
Swiss-Prot:             

Homologs  Archaea  4/68 : Bacteria  678/915 : Eukaryota  181/199 : Viruses  0/175   --->[See Alignment]
c.1.22
:313 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->313 2ejaB PDBj 2e-48 38.6 %
:RPS:PDB   1->313 2ejaB PDBj 3e-39 37.9 %
:RPS:SCOP  1->313 1jphA  c.1.22.1 * 1e-75 33.4 %
:HMM:SCOP  1->313 1uroA_ c.1.22.1 * 6.5e-67 35.6 %
:RPS:PFM   4->312 PF01208 * URO-D 5e-43 38.5 %
:HMM:PFM   1->313 PF01208 * URO-D 1.2e-80 39.7 310/343  
:BLT:SWISS 1->313 DCUP_RICTY 1e-63 42.6 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21167.1 GT:GENE hemE GT:PRODUCT uroporphyrinogen decarboxylase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 335797..336738 GB:FROM 335797 GB:TO 336738 GB:DIRECTION + GB:GENE hemE GB:PRODUCT uroporphyrinogen decarboxylase GB:PROTEIN_ID AAZ21167.1 GB:DB_XREF GI:71062164 GB:GENE:GENE hemE LENGTH 313 SQ:AASEQ MRQAGRYLPEFREIRKLNPDFINLCLNENLSSEITLQPLKRFDLDAAIIFSDILMIPYGLNQEVKFEKNFGPKLGLLDLEKISKIDEIDFVEKLYPVYKSIKKVSEDNLIKNKNLIGFVGAPWTLLVYMINKHSPKKELVKDFFKDEFLINRVLIILEKFLKLHIDQQIKNGATVIQIFDSWAGLLEEKDLPNYVYVPTLNLVNYIKSLNIPVICFPRGIKNYKNYCDIVKPDAVNIDYDVDPVSACKEIKIPVQGGLDPKILLTDKENLKKETLKYLNTFKDHPYIFNLGHGVLPETNPNMVEYLVKIVKDY GT:EXON 1|1-313:0| BL:SWS:NREP 1 BL:SWS:REP 1->313|DCUP_RICTY|1e-63|42.6|310/345| BL:PDB:NREP 1 BL:PDB:REP 1->313|2ejaB|2e-48|38.6|308/336| RP:PDB:NREP 1 RP:PDB:REP 1->313|2ejaB|3e-39|37.9|306/336| RP:PFM:NREP 1 RP:PFM:REP 4->312|PF01208|5e-43|38.5|296/339|URO-D| HM:PFM:NREP 1 HM:PFM:REP 1->313|PF01208|1.2e-80|39.7|310/343|URO-D| GO:PFM:NREP 2 GO:PFM GO:0004853|"GO:uroporphyrinogen decarboxylase activity"|PF01208|IPR000257| GO:PFM GO:0006779|"GO:porphyrin biosynthetic process"|PF01208|IPR000257| RP:SCP:NREP 1 RP:SCP:REP 1->313|1jphA|1e-75|33.4|311/357|c.1.22.1| HM:SCP:REP 1->313|1uroA_|6.5e-67|35.6|312/0|c.1.22.1|1/1|UROD/MetE-like| OP:NHOMO 992 OP:NHOMOORG 863 OP:PATTERN -----------------------------1-------------------------------111---- 1111111111111111111-111111111111111111111111111111111111111111111111111------------11111-----------111111111111111111111111111111111111111111---1111111111111111111111111111111111111111-111---11111111111111111111111111111111111111111111111111111111111111---------------------------------------------------------------------------------------------------------------1--------1111111-----111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111---1----------1111111111-1111--111111111111111111111111111111111111111111111111111111111--11111------11111111111111111-11111111111111111111111111111111111111111111111111111111111111111--1111111111111111111111-----11111111111111111111111111111111111111111111111111111111111111111111111111-111111-----------------------------------------------1- 11--111-1---11111111111111111-11111112211111111111111111111111111111-1111111111111111111-11111111111111111-13-231111--111111111315C1-311111111111-111111-111111111131112131--122234w4443332531423321112 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 313 STR:RPRED 100.0 SQ:SECSTR TTcccTTcHHHHHHHTTcccHHHHHHcHHHHHHHHHHHHHHHccccEEccccTTGGGGGGTcEEEEETTTEEEEccccGGGcccccEEEcGGGGHHHHHHHHHHHHTcHcccccEEEEEEcHHHHHHHHHTTTcccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHTTccEEEEEETTGGGccHHHHHHHTHHHHHHHHHHHHHccccEEEEEccHHHHHHHHTTccccEEEccTTccHHHHHHHccccEEccccGGGGGccHHHHHHHHHHHHTTcccccEEccccccccTTccHHHHHHHHHHHHTc DISOP:02AL 313-314| PSIPRED ccccccccHHHHHHHHccccHHHHHccHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHcccEEEEccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHccccEEEEcccccHHHHHHHcccEEEEcccHHHHcccHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHc //