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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : hemF
DDBJ      :hemF         Coproporphyrinogen III oxidase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  434/915 : Eukaryota  181/199 : Viruses  0/175   --->[See Alignment]
d.248.1
:275 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   17->274 3ejoB PDBj 6e-51 44.4 %
:RPS:PDB   6->274 3ejoA PDBj 3e-86 41.4 %
:RPS:SCOP  7->239 1tk1A  d.248.1.1 * 1e-46 30.7 %
:HMM:SCOP  1->275 1tklA_ d.248.1.1 * 4.2e-112 44.6 %
:RPS:PFM   13->274 PF01218 * Coprogen_oxidas 3e-66 47.7 %
:HMM:PFM   11->275 PF01218 * Coprogen_oxidas 6.6e-107 48.7 261/296  
:BLT:SWISS 2->274 HEM6_CAUSK 1e-74 48.3 %
:PROS 165->189|PS01021|COPROGEN_OXIDASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20926.1 GT:GENE hemF GT:PRODUCT Coproporphyrinogen III oxidase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 113571..114398 GB:FROM 113571 GB:TO 114398 GB:DIRECTION + GB:GENE hemF GB:PRODUCT Coproporphyrinogen III oxidase GB:PROTEIN_ID AAZ20926.1 GB:DB_XREF GI:71061923 GB:GENE:GENE hemF LENGTH 275 SQ:AASEQ MDKEIKKKLASNWFKLLQNTICNDIEKLEGKKSKFKSKTWNRSEIKDEGGGEFRILKNGKIFEKVGVNFSEVHGKFSKKMSKKIPGASKNPNFWASGISIVMHMKNPHVPAIHFNTRFIYTTHGWFGGGMDVTPCIQDLKEKSFLHTELKKMCDRHDKKFYKKYKKWCDEYFYLPHRKETRGIGGIFFDYKKKDWEKDFKFVTDLGVTFQMLFNSIIQLKHKKKWTVKQKEIQYIKRGRYAEFNLLYDRGTKFGLQTGGNVEAILMSLPPIAKWN GT:EXON 1|1-275:0| BL:SWS:NREP 1 BL:SWS:REP 2->274|HEM6_CAUSK|1e-74|48.3|269/290| PROS 165->189|PS01021|COPROGEN_OXIDASE|PDOC00783| SEG 31->38|kkskfksk| SEG 158->166|kkfykkykk| BL:PDB:NREP 1 BL:PDB:REP 17->274|3ejoB|6e-51|44.4|243/291| RP:PDB:NREP 1 RP:PDB:REP 6->274|3ejoA|3e-86|41.4|256/292| RP:PFM:NREP 1 RP:PFM:REP 13->274|PF01218|3e-66|47.7|258/294|Coprogen_oxidas| HM:PFM:NREP 1 HM:PFM:REP 11->275|PF01218|6.6e-107|48.7|261/296|Coprogen_oxidas| GO:PFM:NREP 3 GO:PFM GO:0004109|"GO:coproporphyrinogen oxidase activity"|PF01218|IPR001260| GO:PFM GO:0006779|"GO:porphyrin biosynthetic process"|PF01218|IPR001260| GO:PFM GO:0055114|"GO:oxidation reduction"|PF01218|IPR001260| RP:SCP:NREP 1 RP:SCP:REP 7->239|1tk1A|1e-46|30.7|205/219|d.248.1.1| HM:SCP:REP 1->275|1tklA_|4.2e-112|44.6|271/325|d.248.1.1|1/1|Coproporphyrinogen III oxidase| OP:NHOMO 695 OP:NHOMOORG 615 OP:PATTERN -------------------------------------------------------------------- -----------------------------------------------------------------------------------------------------111111111--------------1-----------111-------1111111111111111111112211111111111111----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--1111-----111111111111111111111111-1111111111111111111111111111111111111111111111111111-1-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-------111111------------------------11111----------------------------1111-1111111-1111111111111111111---1111------11111111111111111-111111111111111111111111111111111111111111111111-1111111111111111--1111111111111111---------------111111111111111111111111111111111111111---111111111111111111111111111-------------------------------------------------------1- 11--111-31--11111111111111111111111111111211111111111111111111111111111111111--111111111-23111121111111222-12--121111-11111111111161-111111-11111111-11111-1112111131111212--231222U2123231121213232224 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 270 STR:RPRED 98.2 SQ:SECSTR ####cHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccEETTccEEEEEEEEccccEEEEEEEEEEEccccccccccEcccccTTcEEEEEEEEEEEEEccTTccEEEEEEEEEEEEcTEEEEEEEEEcccccHHHHHHHHHHHHHHHGGGcTTHHHHHHHHHHHHcEEGGGTEEcccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccHHHHHHHHHHHHHHHHHHHHTcHHHHHHHHTTccHHHHGGGccccccc# DISOP:02AL 1-4, 79-90| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccccccccccccccEEEEEEcccEEEEEEEEEEEEEccccHHHHHcccHHHccccEEEEEEEEEEEccccccccccccEEEEEEcccEEEccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccEEEEEEEEcccEEEEEcccccHHEEEEcccccEEcc //