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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : hflC
DDBJ      :hflC         probable integral membrane proteinase
Swiss-Prot:             

Homologs  Archaea  51/68 : Bacteria  605/915 : Eukaryota  75/199 : Viruses  0/175   --->[See Alignment]
d.43.2
:288 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   56->171 3bk6C PDBj 2e-09 32.1 %
:RPS:PDB   55->229 3bk6A PDBj 9e-23 26.9 %
:RPS:SCOP  55->183 1winA  d.43.2.1 * 6e-22 17.2 %
:HMM:SCOP  52->189 1winA_ d.43.2.1 * 6.4e-33 35.0 %
:RPS:PFM   24->183 PF01145 * Band_7 8e-18 36.7 %
:HMM:PFM   23->197 PF01145 * Band_7 9.3e-36 32.9 173/179  
:BLT:SWISS 3->285 HFLC_VIBPA 1e-41 33.7 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20832.1 GT:GENE hflC GT:PRODUCT probable integral membrane proteinase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(6444..7310) GB:FROM 6444 GB:TO 7310 GB:DIRECTION - GB:GENE hflC GB:PRODUCT probable integral membrane proteinase GB:PROTEIN_ID AAZ20832.1 GB:DB_XREF GI:71061829 GB:GENE:GENE hflC LENGTH 288 SQ:AASEQ MKVQKILLPIIIAVGALAFLSMFIVKETNQAIVLQFGDPKRIITKPGLNFKIPFIQNVVFLDTRILNLDTPPEEVIASDQKRLIVDAFARFRIVDPLKFYISVGNERVARSRLATIINSRLRNVLGQQELQTLLSKDRTKQMALIQEGVNTEAESFGIKIVDVRIKRADLPQANSDAIYRRMQTEREREAKEFRARGAEMAVTITSTADKDVSVILANANKESEIMKGQGDGERNKIFAEAFGRDAEFFAFYRAMQAYETALIGGQTSLILSPDSEFFKFFGNIKPKN GT:EXON 1|1-288:0| BL:SWS:NREP 1 BL:SWS:REP 3->285|HFLC_VIBPA|1e-41|33.7|282/326| TM:NTM 1 TM:REGION 4->26| SEG 185->199|erereakefrargae| BL:PDB:NREP 1 BL:PDB:REP 56->171|3bk6C|2e-09|32.1|112/160| RP:PDB:NREP 1 RP:PDB:REP 55->229|3bk6A|9e-23|26.9|167/170| RP:PFM:NREP 1 RP:PFM:REP 24->183|PF01145|8e-18|36.7|158/183|Band_7| HM:PFM:NREP 1 HM:PFM:REP 23->197|PF01145|9.3e-36|32.9|173/179|Band_7| RP:SCP:NREP 1 RP:SCP:REP 55->183|1winA|6e-22|17.2|128/143|d.43.2.1| HM:SCP:REP 52->189|1winA_|6.4e-33|35.0|137/0|d.43.2.1|1/1|Band 7/SPFH domain| OP:NHOMO 1227 OP:NHOMOORG 731 OP:PATTERN 111-21111111111111-1---111111121--21-211111-11112111-12122221------- -111----111----11-------11------1222--2212--11111---1-11-1--22211121211---------1-21-111------11--------1--11----------------211111111-11111111-1-111211111--------11111122-------1----1-1--11--2-111111111111111-2----111---2-----------------------------------11-----11--11-----------------------------------------------------11--11111111111-1---111311--1-1-1-------21---111---1-21-111111112112111111111111111111-111112113121311222311323121121111111111--------1----2211111111111111111111112112111112211-122122222221222222223333223223232112222221123333232221123111111-122222223111232112222111111113122122112-------------------------223221323223433333422333233322322-1222311-11123212322222222222-222222222222222222222222223232122222222221222222222312222222222221223111112222312221113232222222231111111--1223333332332323222211111111122334333333224322111111111111111---11--11-11111111--------------------1----2222222222--- -------------11------------------11--1111-1--------------1------1----1----1---------1------------------11--12-2884472--1121-22-111B1-113-2111-111-111111-2122-437A85-2153259D31-------------1-----1---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 171 STR:RPRED 59.4 SQ:SECSTR ######################################################cccccccccccEEEEEEEEEEEcTTccEEEEEEEEEEEEccHHHHHHcccccccHHHHHHHHHHHHHHHHHHTccHHHHHHccHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEccTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH####HHHHHHHHHHHHHcTTHHHHHHTT########################################################### DISOP:02AL 261-262, 285-288| PSIPRED ccHHHHHHHHHHHHHHHHHccEEEEcccEEEEEEEEcEEEEEEEccccEEEcccccEEEEEEEEEEEEEccccEEEEccccEEEEEEEEEEEEccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccHHHHHccHHHHHHHHHHHHHHHHHHHccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccEEEEccHHHHHHHHccccccc //