[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : hflK
DDBJ      :hflK         probable integral membrane proteinase
Swiss-Prot:             

Homologs  Archaea  21/68 : Bacteria  506/915 : Eukaryota  14/199 : Viruses  0/175   --->[See Alignment]
d.43.2
:366 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   141->301 3bk6A PDBj 6e-16 19.0 %
:RPS:SCOP  141->259 1winA  d.43.2.1 * 1e-13 13.9 %
:HMM:SCOP  112->261 1winA_ d.43.2.1 * 1e-19 28.4 %
:RPS:PFM   79->273 PF01145 * Band_7 8e-09 33.9 %
:HMM:PFM   76->271 PF01145 * Band_7 1.3e-30 31.8 173/179  
:HMM:PFM   9->50 PF12221 * HflK_N 1.9e-09 37.5 32/42  
:BLT:SWISS 57->344 HFLK_BUCAP 1e-48 37.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20833.1 GT:GENE hflK GT:PRODUCT probable integral membrane proteinase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(7310..8410) GB:FROM 7310 GB:TO 8410 GB:DIRECTION - GB:GENE hflK GB:PRODUCT probable integral membrane proteinase GB:PROTEIN_ID AAZ20833.1 GB:DB_XREF GI:71061830 GB:GENE:GENE hflK LENGTH 366 SQ:AASEQ MSDDFQGRGGSPWGTPPGGGNGSGKGPTPPDVDAIIRDIQSKINKFLPGGSSSGGKPIILVLIILAFVWLASGLYRVLPDEQGVVLRFGKFIKTTQPGLNYHIPFPVEAVETPKVTKVNRMDIGFRSERESGFSQGGGVADIPQESLMLTGDENIVNIDFSVFWIIKDAGKFLFEVQDPESTVKAAAETAMREVVAKSNIQSILTEGRAKIEIETQEIIQKILDEYNSGIQVTQVQTQKADPPNQVIDSFRDVQAARADMERSKNEAEAYANDVIPRARGEAAKIMQAAEAYKQQVVAQAEGEASRFVSIYEEYAKAKEVTQERMYLETMEKVLADIDKVIIEKNAGSGVVPYLPLPELGKKKASN GT:EXON 1|1-366:0| BL:SWS:NREP 1 BL:SWS:REP 57->344|HFLK_BUCAP|1e-48|37.6|266/411| TM:NTM 1 TM:REGION 56->78| SEG 7->30|grggspwgtppgggngsgkgptpp| SEG 49->55|ggsssgg| SEG 210->222|kieietqeiiqki| RP:PDB:NREP 1 RP:PDB:REP 141->301|3bk6A|6e-16|19.0|153/170| RP:PFM:NREP 1 RP:PFM:REP 79->273|PF01145|8e-09|33.9|168/183|Band_7| HM:PFM:NREP 2 HM:PFM:REP 76->271|PF01145|1.3e-30|31.8|173/179|Band_7| HM:PFM:REP 9->50|PF12221|1.9e-09|37.5|32/42|HflK_N| RP:SCP:NREP 1 RP:SCP:REP 141->259|1winA|1e-13|13.9|115/143|d.43.2.1| HM:SCP:REP 112->261|1winA_|1e-19|28.4|134/0|d.43.2.1|1/1|Band 7/SPFH domain| OP:NHOMO 671 OP:NHOMOORG 541 OP:PATTERN ----------------1--1--------1-21--11-111111-1-11------1-1111-------- --1--------------------------------------11-11-11--1111111--11--1-1-111---------1-1-----------11---------------------------------------------------1--11-----------1--------------1----1-1--111-1-111111111111111-1----11----1-----------------------------------------------------------------------------------------------------11-111111122121-1111111212--1----------1------1------2--211111111221111111111111111111-111111113111222211122111121121111111111-------------1211111111111111111211111111111112111-1111111111111111111111111111111111111111111121211121111122-------111121-21111111111111-------1-11-12--2-------------------------111121121121211111111111111111111-2111111-11122212222222222222-222222222222222222211122111222122222222221212222222211111111111111111-----111121112111212111112111----------111111121221111111111111111111222111112223211111111111111112-------1111111111--------------------------1223232333--- -----1---------1---------------------------------------1------1-1----1--111----------------------------11--1------------------------------------------------------------------1-------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 153 STR:RPRED 41.8 SQ:SECSTR ############################################################################################################################################EEEEEE#EEcTTccEEEEEEEEEEEEccHHHHHHccccHHHHHHHHHHHHHHHHHHTccHHHHHHc#HHHHHHHHHHHHHHHTGGG##TEEEEEEEEEEEEcc####TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcTTHHHHHHTT################################################################# DISOP:02AL 6-33, 42-54, 251-263, 338-339, 357-359, 361-366| PSIPRED cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccEEcccccEEEEEEccEEEEEEccccEEEEcccccEEEEEEEEEEEEEEEccccccccccccccEEEEcccccEEEEcccEEEEEEEEEEEEEccHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccEEcccHHHHccccccc //