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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : hisZ
DDBJ      :hisZ         histidine-tRNA ligase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  34/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.104.1
:350 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   6->98 2q7eA PDBj 1e-05 34.8 %
:BLT:PDB   288->343 1wu7B PDBj 3e-04 45.3 %
:RPS:PDB   6->89 3dsqB PDBj 2e-05 25.3 %
:RPS:SCOP  8->348 1usyA  d.104.1.1 * 2e-11 14.8 %
:HMM:SCOP  4->348 1kmmA2 d.104.1.1 * 6.3e-27 26.0 %
:RPS:PFM   135->226 PF05445 * Pox_ser-thr_kin 5e-04 26.4 %
:HMM:PFM   4->132 PF00587 * tRNA-synt_2b 1.7e-10 20.3 128/173  
:HMM:PFM   258->295 PF12066 * DUF3546 0.00029 28.9 38/110  
:BLT:SWISS 22->349 HISZ_RHISN 3e-24 31.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21301.1 GT:GENE hisZ GT:PRODUCT histidine-tRNA ligase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 468623..469675 GB:FROM 468623 GB:TO 469675 GB:DIRECTION + GB:GENE hisZ GB:PRODUCT histidine-tRNA ligase GB:PROTEIN_ID AAZ21301.1 GB:DB_XREF GI:71062298 GB:GENE:GENE hisZ LENGTH 350 SQ:AASEQ MKSKNLSEKILRSVKSKGFKYIDLPSVIEANHIVQRSGENFRKFIFSFTDQNGSELCLRPDLTIASCLRYLENNLKGKEKIFYSGQAYRKSNNKRDSIIRDQVGFEIIGSKDEKKDDKEIINTALKSLSNLQYSSGTLKIGNVEIFNLLISKLDIPKRWKLRLSRHFWREEYFNDLLKRLETNSDVDPTIVEVDKKRYLKMLKDNQQTIVAGRSIEEILKRFDNKIKDPRRASRGKNVSKIIKEFLKINCPIGQAAENLNIFFKKNKINLVVDQKYFPTSLNKIQKLNVEFSASFGRQLEYYTGMVFKIDIKSKSKNINVINGGRYDKLISDLGSKKQVPAVGAALNLNY GT:EXON 1|1-350:0| BL:SWS:NREP 1 BL:SWS:REP 22->349|HISZ_RHISN|3e-24|31.1|322/379| SEG 106->121|eiigskdekkddkeii| SEG 258->270|nlniffkknkinl| SEG 308->322|kidikskskninvin| BL:PDB:NREP 2 BL:PDB:REP 6->98|2q7eA|1e-05|34.8|89/258| BL:PDB:REP 288->343|1wu7B|3e-04|45.3|53/407| RP:PDB:NREP 1 RP:PDB:REP 6->89|3dsqB|2e-05|25.3|79/282| RP:PFM:NREP 1 RP:PFM:REP 135->226|PF05445|5e-04|26.4|87/432|Pox_ser-thr_kin| HM:PFM:NREP 2 HM:PFM:REP 4->132|PF00587|1.7e-10|20.3|128/173|tRNA-synt_2b| HM:PFM:REP 258->295|PF12066|0.00029|28.9|38/110|DUF3546| GO:PFM:NREP 2 GO:PFM GO:0004672|"GO:protein kinase activity"|PF05445|IPR008790| GO:PFM GO:0005524|"GO:ATP binding"|PF05445|IPR008790| RP:SCP:NREP 1 RP:SCP:REP 8->348|1usyA|2e-11|14.8|256/275|d.104.1.1| HM:SCP:REP 4->348|1kmmA2|6.3e-27|26.0|273/322|d.104.1.1|1/1|Class II aaRS and biotin synthetases| OP:NHOMO 34 OP:NHOMOORG 34 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--1111-111111111111111---------1-1-1---111111111-1---------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 156 STR:RPRED 44.6 SQ:SECSTR ####HHHHHHHHHHHTTTcEEccccEcEEEcEEEHHHHHTTccGGGGccccccccEEEccccHHHHHHHHHHHTTcccEEEEEEEEEEcTTcccccGGGc###########################################################################################################################################################################################ccEEcTTccccccccccEEEEEEEETTcccccccEEEEcTTHHHHHcc#ccccEEEEEEEH## PSIPRED ccHHHHHHHHHHHHHHcccEEEEccEEEEHHHHHHHccHHHHcEEEEEEEccccEEEEccccHHHHHHHHHHccccccEEEEEEEEEEcccccccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEHHHcccccccccEEEEEEEccccccccEEccccHHHHHHHHcccccccEEEEEEEccc //