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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : holA
DDBJ      :holA         DNA-directed DNA polymerase III
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  27/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.80.1c.37.1
:331 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  204->311 1jqjC1  a.80.1.1 * 3e-05 16.5 %
:HMM:SCOP  1->199 1jr3D2 c.37.1.20 * 1.7e-09 17.3 %
:HMM:SCOP  204->332 1jr3D1 a.80.1.1 * 6.9e-11 19.0 %
:HMM:PFM   19->180 PF06144 * DNA_pol3_delta 5e-16 23.3 159/172  
:BLT:SWISS 74->275 Y189_RICPR 1e-07 23.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21177.1 GT:GENE holA GT:PRODUCT DNA-directed DNA polymerase III GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(347236..348231) GB:FROM 347236 GB:TO 348231 GB:DIRECTION - GB:GENE holA GB:PRODUCT DNA-directed DNA polymerase III GB:NOTE delta subunit, holA GB:PROTEIN_ID AAZ21177.1 GB:DB_XREF GI:71062174 GB:GENE:GENE holA LENGTH 331 SQ:AASEQ MILKSFELPKIKLNNYKFYLFYGDNEGLKEENIKNLFEKNYKDKIHRYEEKEILDDINIFFNNIFNKSFFDNEKLIIINRATDKIKTIIEELMEKKPEDIQIILNSKNLEKKSSLRKLFEKEKSIACIPFYEDNNQTLNSIISLFFRNKKIPISQQLINVLVERSRGDRKNLNNELEKIENFSLNKKNLNIQEIIKLTNIADNYSASELVDHSLAKNTRKTVTILGENNYSDEDNIIIIRTLLAKLKRLVKIHELVEEKNNIEQAITACKPPIFWKDKPLVIQQIRSWKKDGLEQLIYKTNEIELLVKKNSVLAKNILADFIINNSKKTNN GT:EXON 1|1-331:0| BL:SWS:NREP 1 BL:SWS:REP 74->275|Y189_RICPR|1e-07|23.2|194/321| SEG 55->72|ddiniffnnifnksffdn| SEG 170->181|knlnnelekien| HM:PFM:NREP 1 HM:PFM:REP 19->180|PF06144|5e-16|23.3|159/172|DNA_pol3_delta| RP:SCP:NREP 1 RP:SCP:REP 204->311|1jqjC1|3e-05|16.5|103/117|a.80.1.1| HM:SCP:REP 1->199|1jr3D2|1.7e-09|17.3|196/211|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 204->332|1jr3D1|6.9e-11|19.0|126/127|a.80.1.1|1/1|DNA polymerase III clamp loader subunits, C-terminal domain| OP:NHOMO 27 OP:NHOMOORG 27 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11111111111----------------1-----------------------11111111---1-------11111---------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 255-267, 329-331| PSIPRED ccccHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHHHHHcccccEEccHHHHcccHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcc //