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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : hom
DDBJ      :hom          homoserine dehydrogenase
Swiss-Prot:             

Homologs  Archaea  60/68 : Bacteria  661/915 : Eukaryota  115/199 : Viruses  0/175   --->[See Alignment]
c.2.1d.58.18d.58.3d.81.1
:430 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->252 3do5A PDBj 5e-25 37.1 %
:RPS:PDB   4->309 1ebfA PDBj 6e-25 24.6 %
:RPS:PDB   353->402 3dc2B PDBj 1e-07 22.0 %
:RPS:SCOP  1->103 1nvmB1  c.2.1.3 * 7e-07 16.8 %
:RPS:SCOP  75->186 1t1eA2  d.58.3.2 * 3e-15 6.4 %
:RPS:SCOP  352->429 1u8sA2  d.58.18.5 * 5e-08 18.4 %
:HMM:SCOP  1->160 1ebfA1 c.2.1.3 * 5.1e-30 28.8 %
:HMM:SCOP  139->305 1ebfA2 d.81.1.2 * 3.9e-43 44.5 %
:HMM:SCOP  345->431 1u8sA2 d.58.18.5 * 5.9e-09 24.1 %
:RPS:PFM   11->131 PF03447 * NAD_binding_3 7e-07 31.4 %
:RPS:PFM   139->309 PF00742 * Homoserine_dh 1e-33 44.1 %
:HMM:PFM   139->318 PF00742 * Homoserine_dh 2e-55 44.1 179/179  
:HMM:PFM   352->405 PF01842 * ACT 1.5e-14 28.8 52/66  
:HMM:PFM   11->131 PF03447 * NAD_binding_3 8.5e-14 27.4 113/117  
:BLT:SWISS 1->430 DHOM_HELPJ 2e-53 34.1 %
:PROS 185->208|PS01042|HOMOSER_DHGENASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21831.1 GT:GENE hom GT:PRODUCT homoserine dehydrogenase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1002194..1003486) GB:FROM 1002194 GB:TO 1003486 GB:DIRECTION - GB:GENE hom GB:PRODUCT homoserine dehydrogenase GB:PROTEIN_ID AAZ21831.1 GB:DB_XREF GI:71062828 GB:GENE:GENE hom LENGTH 430 SQ:AASEQ MKNIINIAVVGLGQVGIYLLNELNTKKKDIELKTGKKINVVAVSARSISKKRRFKVNKKIFFKNPLEIFDKTKVDILFEAIGMSDGISKKVVETALKNKIHVITPNKALISKHGDYLGKLAEENNVNLEFEASVAGGIPILRTIKEGLATNKISKVYGILNGTSNYILSEMENSNDSFLNVLKKAQKLGYAEPGNPKLDLNGFDAFAKVRILSALAFNTKISKHKCLLEGIEKIELKDIEISNQLNLRIKLLGISELINGQLFETVHPCLVSKSSYIGNVGGVMNAVILEGKPVGESILQGEGAGPGPTSSSLLSDLLSILRGNIKKPFGIPGSKRKLIKCYNVNNYVNSLYLRFEVKDKPGVLSTITNRLAKYKISVKRLIQTPDKKNNKATIVIITHKTNELNSKNCLSVFNKDKNILRYPTLIRIYN GT:EXON 1|1-430:0| BL:SWS:NREP 1 BL:SWS:REP 1->430|DHOM_HELPJ|2e-53|34.1|414/421| PROS 185->208|PS01042|HOMOSER_DHGENASE|PDOC00800| SEG 310->321|sssllsdllsil| SEG 342->349|ynvnnyvn| BL:PDB:NREP 1 BL:PDB:REP 5->252|3do5A|5e-25|37.1|237/311| RP:PDB:NREP 2 RP:PDB:REP 4->309|1ebfA|6e-25|24.6|293/358| RP:PDB:REP 353->402|3dc2B|1e-07|22.0|50/523| RP:PFM:NREP 2 RP:PFM:REP 11->131|PF03447|7e-07|31.4|118/122|NAD_binding_3| RP:PFM:REP 139->309|PF00742|1e-33|44.1|170/179|Homoserine_dh| HM:PFM:NREP 3 HM:PFM:REP 139->318|PF00742|2e-55|44.1|179/179|Homoserine_dh| HM:PFM:REP 352->405|PF01842|1.5e-14|28.8|52/66|ACT| HM:PFM:REP 11->131|PF03447|8.5e-14|27.4|113/117|NAD_binding_3| GO:PFM:NREP 3 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF03447|IPR005106| GO:PFM GO:0050661|"GO:NADP or NADPH binding"|PF03447|IPR005106| GO:PFM GO:0006520|"GO:cellular amino acid metabolic process"|PF00742|IPR001342| RP:SCP:NREP 3 RP:SCP:REP 1->103|1nvmB1|7e-07|16.8|95/157|c.2.1.3| RP:SCP:REP 75->186|1t1eA2|3e-15|6.4|109/179|d.58.3.2| RP:SCP:REP 352->429|1u8sA2|5e-08|18.4|76/85|d.58.18.5| HM:SCP:REP 1->160|1ebfA1|5.1e-30|28.8|156/169|c.2.1.3|1/1|NAD(P)-binding Rossmann-fold domains| HM:SCP:REP 139->305|1ebfA2|3.9e-43|44.5|164/190|d.81.1.2|1/1|Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain| HM:SCP:REP 345->431|1u8sA2|5.9e-09|24.1|87/93|d.58.18.5|1/1|ACT-like| OP:NHOMO 992 OP:NHOMOORG 836 OP:PATTERN ------1111111111-111111111111111112111111111111111111111111111111-11 1221111111111111111-1111111111111111111111111-111111112111111111111111111111111111-11111111111---11-1212221112---------------1---1-----1-1122111-111111111111111111111111111111111111111111111221133333333233333333111133311211--111111411111111111111111111111-111121--22--11-1-111111111111111111111111-11-------------111111111111111222222212112221---122-11211122111111112221--11111111-11-1111111111111111111111111-1111111111111111112212111111111111111111111111111111111-----------------------------11111111111211122211111111111111111111111111112221121211111211111111111111111-1111111111111-1111111111111-111111111111111111111111111111----11----------1--------------1-1111111-------11-1111111111-111111111111111111---------1-11111111111111-1111111---------------------------111111-1----111-1111222222111111111112122212111111--------1------------------1---------1111111111--------------------------------------1--1-111111 --------21--111111-111111211111111111111111-111111113111111111111111111111-111111-111111-12111121111-211----3------------------------------------------------------1---------1-1111Q1111234521322212111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 430 STR:RPRED 100.0 SQ:SECSTR ccTEEEEEEEcccHHHHHHHHHHHHHTTccTcccccEEEEEEEEccccEEEcccccccccHHHHHHHHTTccHHccEEEEEccccHHHHTTHHHHHHTTcEEEccccGGGcccHHHHHHHcTTcccEEccGGGTTTTcccHHHHHHHHHHTccEEEEEEccHHHHHHHHHHccccccHHHHHHHHHHHTccccTcTHHHHTcHHHHHHHHHHHHHTTcccccTTcccccccccGGGcTTccTHHHHHHHGGGHHHHHHHHHHHTEEEEEEEEcccGGGGccTTcEEEEEEEccEHHHEEEEccccHHHHEEEccTTccEEEEEEETTcHHHHHccccccEEEEEEEEEEEEEEcGGGTTcTTHHHHHHHHHHHTTccEEEEEEcTcHHTTccEEEEEEEHHHHHHHHHHHHHHHTTTTTTTccEEEEEcc DISOP:02AL 384-388| PSIPRED cccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccHHHcccccEEEEccHHHHHcccccEEEEEEccccccHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccHHHEEEEccccccHHHHHHHHHcccEEEEEEEEEEEccEEEEEEEEEEEccccccEEEccccEEEEEEEEcccEEEEEcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHccccEEEEEEEcccccHHHHHHHHHHHccccHHHHHccccccccEEEEEEEEccccHHHHHHHHHHHHcccccccccEEEEEEc //