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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : hpcE
DDBJ      :hpcE         2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxy
Swiss-Prot:             

Homologs  Archaea  56/68 : Bacteria  580/915 : Eukaryota  181/199 : Viruses  0/175   --->[See Alignment]
d.177.1
:280 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   70->280 1wzoB PDBj 9e-32 33.3 %
:RPS:PDB   1->280 2dfuA PDBj 5e-71 28.0 %
:RPS:SCOP  70->280 1gttA1  d.177.1.1 * 4e-66 27.4 %
:HMM:SCOP  58->281 1hyoA2 d.177.1.1 * 1.5e-76 45.9 %
:RPS:PFM   77->278 PF01557 * FAA_hydrolase 3e-48 47.2 %
:HMM:PFM   73->277 PF01557 * FAA_hydrolase 8.3e-67 42.9 203/217  
:BLT:SWISS 1->273 UGL_BURCM 3e-92 58.6 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21594.1 GT:GENE hpcE GT:PRODUCT 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxy GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 753242..754084 GB:FROM 753242 GB:TO 754084 GB:DIRECTION + GB:GENE hpcE GB:PRODUCT 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase/5-carboxymethyl-2-oxo-hex-3-ene-1,7-dioate decarboxy GB:PROTEIN_ID AAZ21594.1 GB:DB_XREF GI:71062591 GB:GENE:GENE hpcE LENGTH 280 SQ:AASEQ MKLLRVGVKGKEKPAALDKNGKFRDLSSHITDLNSDTVNFETIKKLESIDLESLTEISNSERIGACINKPGKFVAIGLNYSDHAAESGMDAPSEPIVFMKATSSINGPNDDIEISKDSKELDWEVELGIIIGKDTKNISEKEAENHILGYCLVNDVSEREWQLKKMGQWVKGKSHDTYGPIGPYLVTKNEISDINSLNLSLDVNGQRMQTGNTDKMIFNVFFIVSYLSKYMTLQAGDIITTGTPPGVGMGKKPQVFLKAGDTIRLSIDNLGEQNSKVVAE GT:EXON 1|1-280:0| BL:SWS:NREP 1 BL:SWS:REP 1->273|UGL_BURCM|3e-92|58.6|273/282| BL:PDB:NREP 1 BL:PDB:REP 70->280|1wzoB|9e-32|33.3|195/238| RP:PDB:NREP 1 RP:PDB:REP 1->280|2dfuA|5e-71|28.0|246/251| RP:PFM:NREP 1 RP:PFM:REP 77->278|PF01557|3e-48|47.2|199/213|FAA_hydrolase| HM:PFM:NREP 1 HM:PFM:REP 73->277|PF01557|8.3e-67|42.9|203/217|FAA_hydrolase| GO:PFM:NREP 2 GO:PFM GO:0003824|"GO:catalytic activity"|PF01557|IPR002529| GO:PFM GO:0008152|"GO:metabolic process"|PF01557|IPR002529| RP:SCP:NREP 1 RP:SCP:REP 70->280|1gttA1|4e-66|27.4|197/213|d.177.1.1| HM:SCP:REP 58->281|1hyoA2|1.5e-76|45.9|222/0|d.177.1.1|1/1|FAH| OP:NHOMO 1936 OP:NHOMOORG 817 OP:PATTERN 11---12444444442-212111231122153-1111111111-----111111111-1112211-11 2231431222221253222-2211362222213343329A221525211222795233--113122435211111111----5-11--11111111---11221241213---------------11-11111-112122211123-111111----------1111111--------1----2222211-31122222222422322233111122214413111111113411111111111111111111-----------11--11-----------------------------------------------------12--1-----------211---------2---1331---1-1112111--1-17111-1--132A781135344333333332332-33633534723-633723433322855313643233245--------221-3412-----------------------------2-4I2-8763678A6752555277955555-564H3B6625443335335772C6331----111111111---221121--1-1-21111111111111-111114-11--1111111--1---------11111--1111212111111111-111111--111----11-------32221211221111122-2212111211212221223333223314242434444434324522122221-122244424444---1---------11125--------------2111111111212444443261232111221---------111111111-11121122222222-------1----11--------------------------------------1--------11 ----222-21--1113443755398972222222223333333222434977FE4454333321311111111131111112222211-32242223222212211-151424212211--12-221217F4-3231211312311-1--2-1222214422134433233112221117111-122322221222222 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 276 STR:RPRED 98.6 SQ:SECSTR cEEEEETETTTTEEEEEETTEEEEEEccTTccEEEEEEEGGGccEEccccHHEEEEEEEHHHHHHHHHHcccEEEEcccccccccccEEEEcGGGEEccccTTcHHHHcccEEEccccccEEccEEEEEEEccccccccHHHHGGGEEEEEEEEccEEHHHHcHHccccHHHHccTTcEEEEEEEEccTccccTTccEEEEEETTEEEEEEEGGGccccHHHHHHHHHTTccccTTcEEEccccccccEc####EcccTTcEEEEEETTTEEEEEEEEEE PSIPRED cEEEEEccccEEEEEEEEcccEEEEcccccccccHHHccHHHHHHHHHccccccccccccEEEEcccccccEEEEEEccHHHHHHHcccccccccEEEEcccccEEcccccEEcccccccccccEEEEEEEccccccccHHHHHHHHHEEEEEEEccHHHHHcccccccEEEcccccccccccEEEcHHHcccccccEEEEEEccEEEEEccHHHHcccHHHHHHHHHcccEEccccEEEEccccccccccccccEEccccEEEEEEccEEEEEEEEEEc //