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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : hslU
DDBJ      :hslU         ATP-dependent protease
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  880/915 : Eukaryota  123/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:455 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   23->455 1do0A PDBj e-132 60.5 %
:RPS:PDB   27->455 1e94E PDBj 1e-31 53.5 %
:RPS:SCOP  23->455 1do0A  c.37.1.20 * 9e-49 55.2 %
:HMM:SCOP  23->455 1g41A_ c.37.1.20 * 1.6e-78 29.6 %
:RPS:PFM   70->125,260->340 PF07724 * AAA_2 8e-10 56.5 %
:RPS:PFM   347->417 PF10431 * ClpB_D2-small 2e-08 58.7 %
:HMM:PFM   218->341 PF07724 * AAA_2 7.1e-41 47.1 119/171  
:HMM:PFM   347->417 PF10431 * ClpB_D2-small 6.1e-10 37.1 62/89  
:HMM:PFM   73->109 PF07728 * AAA_5 4e-07 35.1 37/139  
:BLT:SWISS 22->455 HSLU_PARL1 e-162 65.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21157.1 GT:GENE hslU GT:PRODUCT ATP-dependent protease GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 328663..330030 GB:FROM 328663 GB:TO 330030 GB:DIRECTION + GB:GENE hslU GB:PRODUCT ATP-dependent protease GB:NOTE heat shock hslU GB:PROTEIN_ID AAZ21157.1 GB:DB_XREF GI:71062154 GB:GENE:GENE hslU LENGTH 455 SQ:AASEQ MKDTNVTPFPKEKTEKKDNSLVSSLSPREIVSELDRYVVGQNKAKKAVAIALRNRWRRQALKGEMKNEVLPKNILMIGPTGVGKTEISRRLSKLAEAPFVKVEATRFTEVGYVGRDVEQIIRDLLEIAIAMEKVKKRKEVHAKAQKLAEEKVLDALVGDKASLATRESFRKRLRDGDLDDNEIEIEVNNSGSQAAFEIPGMPGANIGMINIGEMIGKSVGNKQKKKKMTVKESHEILINDEADKLIEEDKIIKSAKDSTENNGIVFLDEIDKISGRTDRSGGDVSREGVQRDLLPLIEGTTVSTKYGTIKTDHILFIASGAFQLAKPSDLLPELQGRLPIRVELEALTSDDFKRILKEPDYSLIKQYIALLKTENVELEFSDDGIDAIANMASEVNNTVENIGARRLHTIIERILDDISFTATDRAGEKIIIDSNYVKQNLDELVKDTDLSKFIL GT:EXON 1|1-455:0| BL:SWS:NREP 1 BL:SWS:REP 22->455|HSLU_PARL1|e-162|65.7|434/435| SEG 203->216|ganigminigemig| SEG 222->227|kqkkkk| BL:PDB:NREP 1 BL:PDB:REP 23->455|1do0A|e-132|60.5|395/406| RP:PDB:NREP 1 RP:PDB:REP 27->455|1e94E|1e-31|53.5|400/408| RP:PFM:NREP 2 RP:PFM:REP 70->125,260->340|PF07724|8e-10|56.5|121/160|AAA_2| RP:PFM:REP 347->417|PF10431|2e-08|58.7|63/90|ClpB_D2-small| HM:PFM:NREP 3 HM:PFM:REP 218->341|PF07724|7.1e-41|47.1|119/171|AAA_2| HM:PFM:REP 347->417|PF10431|6.1e-10|37.1|62/89|ClpB_D2-small| HM:PFM:REP 73->109|PF07728|4e-07|35.1|37/139|AAA_5| GO:PFM:NREP 1 GO:PFM GO:0005524|"GO:ATP binding"|PF07724|IPR013093| RP:SCP:NREP 1 RP:SCP:REP 23->455|1do0A|9e-49|55.2|406/406|c.37.1.20| HM:SCP:REP 23->455|1g41A_|1.6e-78|29.6|432/443|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1710 OP:NHOMOORG 1003 OP:PATTERN -------------------------------------------------------------------- 2221111111111111111-111111111111111111111111111111111111111111111121111111111111111222221111111121-11111112211111111111111111222222222221-111---1211111111111111111111111111111111111111112211-22222222232222222222222222222222222222222222222222222222222222222212212222211222221111111111111111111111111111111111111111111111111121111111111111111111111211111222222222222222222111221222222222222222222222222122222222-2222222222222222222222222222222222222222222222222212222222222222211222222222222222222222222222222222222222222222222222222221122222222211222223211122111111122222313332222222222211111112144345123221222222222222222222322222222222222222222222222222222222212233222222222222232222222222-22222222222222222222222222222222222222222222222222222222222222222112222222222242222222222222212222111111111132222222222222232222222222222122222222222222222222222212211232222222222222221--------------------------2222222222211 11--111-522-11111--111-1-1111-------1111111--------------1----1---11--11-1-1----1-----------1-1-1111-11222-1421-1-1--1-11-1122111171-11111112-111111-11-12-2111--1211--21188-132332G322116233-322244332 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 430 STR:RPRED 94.5 SQ:SECSTR #####HccccccEEEcccccccccccHHHHHHHHHTTccccHHHHHHHHHHHHHHHHHHTccHHHHHHcccccEEEEccTTccHHHHHHHHHTTTTccEEEEEGGGGGGGGTccccTTHHHHHHHHHHHHHHHHTTTTHHHHTTcccHHHHHHTTTccccccccccccccGGGcccccHHHHHHHTTccccccccEEcccccEE####################cEEccHccccccTTHHHHHHHHHTcccHHHHTHHHHHHcEEEEETGGGGcccTTccHHHHHHHHHHHHHHHHHHccEEEETTEEEEGGGcEEEEEEccccccGGGccHHHHHTccEEEEcccccHHHHHHHHHccTTcHHHHHHHHHHHTTcEEEEcHHHHHHHHHHHHHHHHHccccTTHHHHHHHHHHHHHHHHHGGGGTTcEEEEcHHHHHHHHHHHHHcHHHHHHHc DISOP:02AL 1-28, 59-69, 154-168, 176-213, 271-288| PSIPRED ccccccccccHHHcccHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEccccccHHHHHHHHHHHHcccEEEEEccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccEEEEEEEEccccccHHHccccccHHHHHHHHHHHHHHccccccEEEEEHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHcccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHcccHHHHcccccccHHHHccccEEEEcccccHHHHHHHHHccHHHHHHHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccEEEEEHHHHHcHHHHHHHHcccHHccc //