[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : htrA
DDBJ      :htrA         probable periplasmic serine protease DO-like precursor
Swiss-Prot:             

Homologs  Archaea  29/68 : Bacteria  873/915 : Eukaryota  90/199 : Viruses  0/175   --->[See Alignment]
b.36.1b.47.1
:470 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   81->440 2zleA PDBj 3e-57 42.0 %
:RPS:PDB   74->296 2azoB PDBj 6e-37 10.2 %
:RPS:PDB   277->344 2djtA PDBj 7e-11 14.7 %
:RPS:SCOP  84->223 2bhgA1  b.47.1.4 * 9e-40 18.8 %
:RPS:SCOP  256->348 1ky9A1  b.36.1.4 * 1e-17 34.4 %
:HMM:SCOP  24->251 1l1jA_ b.47.1.1 * 8.8e-70 44.8 %
:HMM:SCOP  229->344 1wi2A_ b.36.1.1 * 1e-23 37.5 %
:HMM:SCOP  375->465 1lcyA1 b.36.1.4 * 2.1e-06 23.0 %
:RPS:PFM   257->336 PF00595 * PDZ 1e-06 37.0 %
:HMM:PFM   85->243 PF00089 * Trypsin 6.2e-19 26.1 157/219  
:HMM:PFM   253->336 PF00595 * PDZ 1.2e-13 26.7 75/81  
:BLT:SWISS 77->470 DEGP_BRUSU 4e-72 38.6 %
:REPEAT 2|260->342|378->461
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20830.1 GT:GENE htrA GT:PRODUCT probable periplasmic serine protease DO-like precursor GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(4835..6247) GB:FROM 4835 GB:TO 6247 GB:DIRECTION - GB:GENE htrA GB:PRODUCT probable periplasmic serine protease DO-like precursor GB:PROTEIN_ID AAZ20830.1 GB:DB_XREF GI:71061827 GB:GENE:GENE htrA LENGTH 470 SQ:AASEQ MNRIKKLFIIFFAISFASQGFAKDAPASFADLAEKLMPSVVNISTTTTVTTNSNPFPGFQFPPGSPFEDMFKEFGTPQTRKSAALGSGFIIEESGIVITNNHVIQNAEDILVRVDGDKEYKATVVGADPLSDIAVLQIDSKEKFIPVKFGNSDQARIGDWVIAIGNPFGLGGTVTAGIISARNRSIGLSRYEDYIQTDASINSGNSGGPLFDMNGDVIGINTAILGKGGSIGIGFSIPSNDAKRVVNQLIEFGETKRGWLGVRIQVVSEEIAEVEKLDEPRGALVASVAENSPSDKAGIKAGDIILEFNNTKIKEMKELPIIVAQTEVGKTVDVKIWRNKREITKKIKLGRLETSEDFKVEKKETKEETPEISEIKSLKIIVRPLNDEDIEQRKLPNQTTGLVITNIGKNSPIDYLNVGDVIVEAQKKKIKSTKDLEDIVGTVLKSNQKTILIVIYNNQNQRRYIGVKLD GT:EXON 1|1-470:0| BL:SWS:NREP 1 BL:SWS:REP 77->470|DEGP_BRUSU|4e-72|38.6|381/513| NREPEAT 1 REPEAT 2|260->342|378->461| SEG 8->18|fiiffaisfas| SEG 39->67|svvnisttttvttnsnpfpgfqfppgspf| SEG 226->239|gkggsigigfsips| SEG 361->377|ekketkeetpeiseiks| BL:PDB:NREP 1 BL:PDB:REP 81->440|2zleA|3e-57|42.0|326/396| RP:PDB:NREP 2 RP:PDB:REP 74->296|2azoB|6e-37|10.2|206/227| RP:PDB:REP 277->344|2djtA|7e-11|14.7|68/104| RP:PFM:NREP 1 RP:PFM:REP 257->336|PF00595|1e-06|37.0|73/82|PDZ| HM:PFM:NREP 2 HM:PFM:REP 85->243|PF00089|6.2e-19|26.1|157/219|Trypsin| HM:PFM:REP 253->336|PF00595|1.2e-13|26.7|75/81|PDZ| GO:PFM:NREP 1 GO:PFM GO:0005515|"GO:protein binding"|PF00595|IPR001478| RP:SCP:NREP 2 RP:SCP:REP 84->223|2bhgA1|9e-40|18.8|138/194|b.47.1.4| RP:SCP:REP 256->348|1ky9A1|1e-17|34.4|93/94|b.36.1.4| HM:SCP:REP 24->251|1l1jA_|8.8e-70|44.8|223/228|b.47.1.1|1/1|Trypsin-like serine proteases| HM:SCP:REP 229->344|1wi2A_|1e-23|37.5|104/0|b.36.1.1|1/2|PDZ domain-like| HM:SCP:REP 375->465|1lcyA1|2.1e-06|23.0|87/100|b.36.1.4|2/2|PDZ domain-like| OP:NHOMO 2558 OP:NHOMOORG 992 OP:PATTERN --1----1111111111111111-111112-1--1-----------1-----------------1-13 2382611211111234443-34444344444434442354344433112111334211113421425345311111111111412222112112111--1111223212211111111111111121111112131333554444463473342233333433233554763322223322236532222-423222222222222222223333223122332211111146222222222222222222221111111111111111111122211111111111111111111111111111111111111111111111211311111111111423322223231141221222221223322221-223A333733333649985436455333333333333-5665555446315333676655344343331243332233333333323333A331111111111111111111111111111122122122222444544334445545444444554444322543543423443422332422221111111233363331121232432221232342242564586351111111111111111111121121332222244232222222222222222222221-2323411-11133332333333333333-3333333333333333333333332223333333333333333333332333133333333333311322222222225342212222222221222223222222223422222222222222233---------12222222222222222222222222222--4122222211121222331-------------111---------1111111111453 2-----2-1---112-----------------------------------------------1---------------------------------------------D-25544a24313444752739H4-339132255433-422242164544311111--11121--214654r44477977A-793421117 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 387 STR:RPRED 82.3 SQ:SECSTR ######################################################################cccccccccHHHTTccHHHHHHTTTccccccccccccHHHHHHHHHTHHHTTcccccccccEETTTTEEEEEcEEEcTTccccccEEEEEcccccccccccTTcTTTTTTTcEEEEEEEccGccccccEEEcccHHHHHHHHHHHHHHHHHHHTTccTTccccccccEEEccccTTccEEEEcTTccEEEEccEEEEEHHHHHHTTcccccHHHHHHHHHHHHTTcEEEcTTccEEEEcccccccGGGTTcccccccTTccccEEEEETTEEEEEEEEEccccHHHHHcHHHHccc##ccccccccccccccccccccTTTccEccTTTccEEEcccccccTTGTccTTcEEccccccccccHHHHHHHT###HHTcccccEEEEEETTEEE######## DISOP:02AL 50-59, 71-84, 386-395| PSIPRED ccHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccEEEEEEEEEEEcccccccccccccccHHHHHccccccccccEEEEEEEEEEEccccEEEEEHHHHccccEEEEEEcccEEEEEEEEEEcccccEEEEEEEccccccEEEcccccccccccEEEEEEEccccccEEEEEEEEEccccccccccccEEEEccccccccccHHHHccccEEEEEEEEEEcccccccccEEEEHHHHHHHHHHHHcccccccEEEEEEEEcccHHHHHHcccccccEEEEEEEcccccHHHcccccccEEEEEccEEcccHHHHHHHHHHcccccEEEEEEEEccEEEEEEEEEEEcccccccccccccccccccEEEEEEEcccEEccccHHHHHHcccccccccEEEEEcccccHHHccccccEEEEEccEEcccHHHHHHHHHHHHcccccEEEEEEEEccccEEEEEEEEc //