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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : htrB
DDBJ      :htrB         lipid A biosynthesis lauroyl acyltransferase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  232/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
:286 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   73->286 PF03279 * Lip_A_acyltrans 1e-27 29.2 %
:HMM:PFM   4->286 PF03279 * Lip_A_acyltrans 1.6e-47 23.9 280/295  
:BLT:SWISS 92->280 MSBB2_SHIFL 3e-08 21.4 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20973.1 GT:GENE htrB GT:PRODUCT lipid A biosynthesis lauroyl acyltransferase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 154687..155547 GB:FROM 154687 GB:TO 155547 GB:DIRECTION + GB:GENE htrB GB:PRODUCT lipid A biosynthesis lauroyl acyltransferase GB:PROTEIN_ID AAZ20973.1 GB:DB_XREF GI:71061970 GB:GENE:GENE htrB LENGTH 286 SQ:AASEQ MKKIKYFFEFLIISSLFIIYKFLGLKISSHFSGKLFETFGPIFRSKNLIKTNIQRAIPKINTSKIKSITKDMWNNYGRTLSEYMFLKGFRNDQFRSNINITGKEILQKIKFEKTPVIFVSGHFSNFELMAMEIEKSGVNLSAIYRPLNNIFLNILMERIRKKYICKNQIKKGTSGVRELLKLYKKGYSIALMIDQRVSQGIKSKFFNQEAFTTTIPAQFIKKFNCKVVPISIKRHNGVNFNIKVEKPIEFSKNSSTEKITRELNIWLEKTILKNPGEWIWSHDRWK GT:EXON 1|1-286:0| BL:SWS:NREP 1 BL:SWS:REP 92->280|MSBB2_SHIFL|3e-08|21.4|187/314| TM:NTM 1 TM:REGION 7->29| SEG 7->19|ffefliisslfii| SEG 57->70|ipkintskiksitk| RP:PFM:NREP 1 RP:PFM:REP 73->286|PF03279|1e-27|29.2|212/282|Lip_A_acyltrans| HM:PFM:NREP 1 HM:PFM:REP 4->286|PF03279|1.6e-47|23.9|280/295|Lip_A_acyltrans| GO:PFM:NREP 3 GO:PFM GO:0008415|"GO:acyltransferase activity"|PF03279|IPR004960| GO:PFM GO:0009244|"GO:lipopolysaccharide core region biosynthetic process"|PF03279|IPR004960| GO:PFM GO:0016021|"GO:integral to membrane"|PF03279|IPR004960| OP:NHOMO 244 OP:NHOMOORG 233 OP:PATTERN -------------------------------------------------------------------- 111-------------------------------------------------------------------------------------111--1111----1---212---------11111-1---1--------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------11--111111111--1111111111111111111111-11111111111-111111111111211111111111112111111111111111-------------1111111111111----1------11-1-----------------------------1--------111---111----------------1-111-1-----------2221111-11111--1111111111111-1-------11111-------11---------------------------1-1--------------------------------------------------------------------------------------------1-----2222--1-1---------------11111-----111111111111-111111111-11111----------11-1-1111111---11111--111--11------------------------------------------------1 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 286-287| PSIPRED cccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccEEEccHHHHHHHHHccccEEEEEcccHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccEEEEEEcccccccEEEccccEEcccccHHHHHHHHHcccEEEEEEEEccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHcccc //