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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : icdA
DDBJ      :icdA         isocitrate dehydrogenase (NADP)
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  168/915 : Eukaryota  190/199 : Viruses  0/175   --->[See Alignment]
c.77.1
:404 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   3->403 1lwdA PDBj e-172 70.1 %
:RPS:PDB   3->403 2cmjA PDBj e-105 69.5 %
:RPS:SCOP  1->403 1lwdA  c.77.1.1 * e-112 69.0 %
:HMM:SCOP  1->406 1lwdA_ c.77.1.1 * 1.3e-153 42.6 %
:RPS:PFM   15->382 PF00180 * Iso_dh 3e-22 33.9 %
:HMM:PFM   5->394 PF00180 * Iso_dh 1.1e-74 26.4 341/347  
:BLT:SWISS 3->403 IDHP_MOUSE e-171 70.3 %
:PROS 270->289|PS00470|IDH_IMDH

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21464.1 GT:GENE icdA GT:PRODUCT isocitrate dehydrogenase (NADP) GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(631202..632416) GB:FROM 631202 GB:TO 632416 GB:DIRECTION - GB:GENE icdA GB:PRODUCT isocitrate dehydrogenase (NADP) GB:PROTEIN_ID AAZ21464.1 GB:DB_XREF GI:71062461 GB:GENE:GENE icdA LENGTH 404 SQ:AASEQ MAKIKVKNPVVELDGDEMTRVIWEFIKSKLILPYLDLDIKYYDLGMKSRDDTDDQITIDSANAIKEHSVGIKCATITPDEARVEEFKLKKMWRSPNGTIRNILGGTVFREPIICKNIPKLVPTWTDPLIIGRHAFGDQYRATDFKVPGKGKMEIKWTAEDGSDEIKYEVFNFPGPGIALSMYNLDKSIEDFARSCFNYGIIKKWPVYLSTKNTILKIYDGRFKDIFQDIFDKEFKSDFDKLNITYEHRLIDDMVACAMKWSGKYIWACKNYDGDVQSDTVAQGYGSLGLMTSVLLAPDGKTMEAEAAHGTVTRHYRMHQEGKETSTNPIASIFAWTRGLAHRGKLDGNEDLIKFSTTLEKVCIDCVENGSMTKDLAILIGPSSNYLTTNQFLDELDGQLKKKLN GT:EXON 1|1-404:0| BL:SWS:NREP 1 BL:SWS:REP 3->403|IDHP_MOUSE|e-171|70.3|401/452| PROS 270->289|PS00470|IDH_IMDH|PDOC00389| BL:PDB:NREP 1 BL:PDB:REP 3->403|1lwdA|e-172|70.1|401/413| RP:PDB:NREP 1 RP:PDB:REP 3->403|2cmjA|e-105|69.5|400/410| RP:PFM:NREP 1 RP:PFM:REP 15->382|PF00180|3e-22|33.9|316/338|Iso_dh| HM:PFM:NREP 1 HM:PFM:REP 5->394|PF00180|1.1e-74|26.4|341/347|Iso_dh| GO:PFM:NREP 4 GO:PFM GO:0000287|"GO:magnesium ion binding"|PF00180|IPR001804| GO:PFM GO:0016616|"GO:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"|PF00180|IPR001804| GO:PFM GO:0051287|"GO:NAD or NADH binding"|PF00180|IPR001804| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00180|IPR001804| RP:SCP:NREP 1 RP:SCP:REP 1->403|1lwdA|e-112|69.0|403/413|c.77.1.1| HM:SCP:REP 1->406|1lwdA_|1.3e-153|42.6|406/413|c.77.1.1|1/1|Isocitrate/Isopropylmalate dehydrogenase-like| OP:NHOMO 559 OP:NHOMOORG 358 OP:PATTERN -------------------------------------------------------------------- ----1----------1111-1---1-11111-----11111---11--1111-----1--11--111---11111111--111-------------------1--111------------------------------------1---1-----------------1---------------------11-1---------------------------------------------------------------------------------------------------------------------------------------1-------1-11-11------1--111--1111------111----1--111111111211111111111111111111111-1111111111111111-111111111111-1122221--11111111111-11-1-----------------------------11111------------------------------------------------------------------------1---1-------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111111-----------------------------------------1-111--- 12--22--312-1111111111111111111111111111111111111111111111111112222212332222323322222211-12511112111111212-3-14383333222223243352BK2-224121242223123212222212222232222294262222111172121124451321122211 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 404 STR:RPRED 100.0 SQ:SECSTR cccEEEEEEEEEEEccHHHHHHHHHHHHHHTTTTEEEEEEEEEccHHHHHHTTTHHHHHHHHHHHHHcEEEEcccccccHHHHHHHTcccccccHHHHHHHHHccEEEEEEcccTTcccccTTccccEEEEEEcccGGGGcEEEEEcccEEEEEEEccccccccEEEEEEEEcccEEEEEccccHHHHHHHHHHHHHHHHHHTccEEEEEcTTTcTTHHHHHHHHHHHHHHHHTHHHHHHTTccEEEEEHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHTcTTcEEEEEEcTTcccEEEEccccccHHHHHHHHTTcccccccHHHHHHHHHHHHHHHHHHTcHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHcGGGcccHHHHHHHHHHHHHHHHT PSIPRED cccccccccEEEEccccHHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHcccccHHHHHHHHHccEEEEccccccccccccccccccccccHHHHHHHHHccEEEEEEEEEcccccccccccccEEEEEEccccEEEEEEEEEccccccEEEEEcccccccEEEEEEEcccccEEEEEEEHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHccHHHHHcHHHcccccccEEccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccEEcHHHHHHHHHHHHHHHcc //