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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : ispA
DDBJ      :ispA         geranyltranstransferase
Swiss-Prot:             

Homologs  Archaea  61/68 : Bacteria  795/915 : Eukaryota  96/199 : Viruses  0/175   --->[See Alignment]
a.128.1
:259 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->259 1rqjB PDBj 5e-37 33.6 %
:RPS:PDB   1->259 2azlA PDBj 3e-38 20.9 %
:RPS:SCOP  1->194 1rqiA  a.128.1.1 * 8e-42 39.7 %
:HMM:SCOP  1->260 1rtrA_ a.128.1.1 * 6.3e-67 31.4 %
:RPS:PFM   1->193 PF00348 * polyprenyl_synt 2e-26 36.9 %
:HMM:PFM   1->242 PF00348 * polyprenyl_synt 9.2e-64 34.0 238/260  
:BLT:SWISS 1->259 ISPA_MICLU 2e-39 35.4 %
:PROS 178->190|PS00444|POLYPRENYL_SYNTHET_2
:PROS 46->62|PS00723|POLYPRENYL_SYNTHET_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21431.1 GT:GENE ispA GT:PRODUCT geranyltranstransferase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 595774..596553 GB:FROM 595774 GB:TO 596553 GB:DIRECTION + GB:GENE ispA GB:PRODUCT geranyltranstransferase GB:NOTE substrain RIMD 0509952 GB:PROTEIN_ID AAZ21431.1 GB:DB_XREF GI:71062428 GB:GENE:GENE ispA LENGTH 259 SQ:AASEQ MEYGLFPGGKKIRSKILIDIGAIFKINYKTLISIGAAVECIHAYSLIHDDLPCMDDDKIRRGKISTHIKFGESTAVLAGNSLLTMAFEILVSSSLKINEKIKVDLVKKLSETSGHLGIAGGQYLDLSFEKKKVSKSKIIDMEIKKTGKLFSFCCAVPVIIKRKSNTQIKFFENIGSNIGLLFQIADDLIDFKGSTVIAGKLTGKDKKKGKATLISLLGYQNAIKYADKIKSKIIKDLNKYSSNTNSLNETLDYILKRNK GT:EXON 1|1-259:0| BL:SWS:NREP 1 BL:SWS:REP 1->259|ISPA_MICLU|2e-39|35.4|257/291| PROS 178->190|PS00444|POLYPRENYL_SYNTHET_2|PDOC00407| PROS 46->62|PS00723|POLYPRENYL_SYNTHET_1|PDOC00407| SEG 198->213|agkltgkdkkkgkatl| BL:PDB:NREP 1 BL:PDB:REP 1->259|1rqjB|5e-37|33.6|259/298| RP:PDB:NREP 1 RP:PDB:REP 1->259|2azlA|3e-38|20.9|244/279| RP:PFM:NREP 1 RP:PFM:REP 1->193|PF00348|2e-26|36.9|187/246|polyprenyl_synt| HM:PFM:NREP 1 HM:PFM:REP 1->242|PF00348|9.2e-64|34.0|238/260|polyprenyl_synt| GO:PFM:NREP 1 GO:PFM GO:0008299|"GO:isoprenoid biosynthetic process"|PF00348|IPR000092| RP:SCP:NREP 1 RP:SCP:REP 1->194|1rqiA|8e-42|39.7|194/300|a.128.1.1| HM:SCP:REP 1->260|1rtrA_|6.3e-67|31.4|258/290|a.128.1.1|1/1|Terpenoid synthases| OP:NHOMO 1677 OP:NHOMOORG 952 OP:PATTERN 11-1-1111111111112111--21111-11111111111111111111222211112111122--22 322-----111-1-1---------4--------------------------1------11---121331-1-------1--13222221122211111-1122221221111111111111111222222122212---1111--21112111112222222211122221222222222222-----11122111111111111111111111111111122223333332222222222222222212222312122112-23322221211223332222111111111111111111111111111111111111111211112-11111111121111111112112112133221222221121-21122322122222233432223333322222222222-33333233232222223332222223122332333332222222222222222332222222222111111111111111222222222122223222222222222222233312222222222222222222222222222222222222222222222221222211211122222222222--1-31222222122222211111111121122222222222222222222221222122221111-222321--11123222222222222222-2222222222222222222222222322222222222222222222222222222222222222212212222211112222222212222222222222222212223222222222222223222222222222222221111121112222222222211112221222222----------1--------------------------111-11112211 11--11--1-1----1---1---212-111111----------111--11111-----11112---1---1---------------1-------1-----1-------212111112----11-1--11241-1--1---1-111-11-11--2-111211--212-1---11111221Z33312448C-F421----3 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 259 STR:RPRED 100.0 SQ:SECSTR HHTTcccccccHHHHHHHHHHHHTccccHHHHHHHHHHHHHHHHHHHHHHHHHTccccEETTEEcHHHHTcHHHHHHHHHHHHHHHHHHHHHHTccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHTTTccccHHHHHHHHHHHTHHHHHHHHHHHHHHTTcccHHHcccHHHHHHHHHHHHHHHHHHHHHTcccccTTcccccTTTTccHHHHHHHHHHcHHHHHHHHTTcHHHHHHHHHHTTHHHHHHHHHHHHHH DISOP:02AL 259-260| PSIPRED ccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccHHHHHHHccccHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcc //