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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : ispB
DDBJ      :ispB         octaprenyl-diphosphate synthase
Swiss-Prot:             

Homologs  Archaea  67/68 : Bacteria  864/915 : Eukaryota  194/199 : Viruses  0/175   --->[See Alignment]
a.128.1
:337 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->335 1wy0A PDBj 6e-46 33.4 %
:RPS:PDB   6->334 3b7lA PDBj 1e-57 19.1 %
:RPS:SCOP  42->325 2q80A1  a.128.1.1 * 1e-55 22.9 %
:HMM:SCOP  4->337 1ubyA_ a.128.1.1 * 1e-83 33.4 %
:RPS:PFM   47->274 PF00348 * polyprenyl_synt 7e-43 43.4 %
:HMM:PFM   48->292 PF00348 * polyprenyl_synt 2.7e-61 33.5 239/260  
:HMM:PFM   14->67 PF02195 * ParBc 0.00055 33.3 54/90  
:BLT:SWISS 29->335 ISPB_SHIFL 4e-51 35.4 %
:PROS 94->108|PS00723|POLYPRENYL_SYNTHET_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21435.1 GT:GENE ispB GT:PRODUCT octaprenyl-diphosphate synthase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(600214..601227) GB:FROM 600214 GB:TO 601227 GB:DIRECTION - GB:GENE ispB GB:PRODUCT octaprenyl-diphosphate synthase GB:PROTEIN_ID AAZ21435.1 GB:DB_XREF GI:71062432 GB:GENE:GENE ispB LENGTH 337 SQ:AASEQ MGTVVQLRNQINNSYYQLKDSVDEKLVLVEEKIKSKLLSDVDLVQKMTEYHIDTGGKRLRALLTLGSAKLCGYTKGGRDINLAACVEMIHGATLMHDDVIDLGNIRRGKKTLNSIWGNHSSVLIGDYLLSRCFEMMVDDGNIEVLKLLSSTSSKIAQGEVLQLQHKGEVDMLEETYFKIITAKTAELFSAATKVGAILSNKETKEKEALEFYGKNLGLTFQIADDTLDYNSDLKFFGKKIGKDFLEGKITLPVILLFQNVSSIEKDKLKNIFKQETRSNEDLNLTLELIKKYNIINECYKKAEHFINLASNSLTVFKDSDEKKILESLTSFSLQRTF GT:EXON 1|1-337:0| BL:SWS:NREP 1 BL:SWS:REP 29->335|ISPB_SHIFL|4e-51|35.4|305/323| PROS 94->108|PS00723|POLYPRENYL_SYNTHET_1|PDOC00407| BL:PDB:NREP 1 BL:PDB:REP 15->335|1wy0A|6e-46|33.4|317/327| RP:PDB:NREP 1 RP:PDB:REP 6->334|3b7lA|1e-57|19.1|320/343| RP:PFM:NREP 1 RP:PFM:REP 47->274|PF00348|7e-43|43.4|226/246|polyprenyl_synt| HM:PFM:NREP 2 HM:PFM:REP 48->292|PF00348|2.7e-61|33.5|239/260|polyprenyl_synt| HM:PFM:REP 14->67|PF02195|0.00055|33.3|54/90|ParBc| GO:PFM:NREP 1 GO:PFM GO:0008299|"GO:isoprenoid biosynthetic process"|PF00348|IPR000092| RP:SCP:NREP 1 RP:SCP:REP 42->325|2q80A1|1e-55|22.9|271/285|a.128.1.1| HM:SCP:REP 4->337|1ubyA_|1e-83|33.4|329/0|a.128.1.1|1/1|Terpenoid synthases| OP:NHOMO 2216 OP:NHOMOORG 1125 OP:PATTERN 11111222222222222222222222221212111111111111112122222111121112222-22 2221222222212122233-321151333331222211112111112112211111111111124263252-11111111112222222222222211122222222222--------------222222222222222331112232232222222222222222222222222222222222221111132222222222222222222222222222222223333332222222222222222222222311133122-23322231212233332222111111111111111111111111111111122111222211112-11111111121111111112111112133223322232121-21222222222222223322212222222222222222-22122111121222212212111121222232333332122222222222222222222222221111111111111111212222212221113222222222222222233312222122222222221211112122222211222222222222222222221222122212222222222111122222222222222222222222222222222222212222222222222222222222221-22221---11123222222222222222-222222222222222222222212222222222222222222212222222221222122221111222222222222222112222122222222222222222222322212212222222211222222222222222222222222222111111112222222122222211111111111-------------------------111-121222212 1111221-521-1212311243353622222122221333243222112232211231122221112121221222222221111111-21132441111211434-1513223334222222222252CC4-4322221321221222221131223311123242232711323333z3333374BG2C63412226 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 332 STR:RPRED 98.5 SQ:SECSTR #####HHHHHHHHTHHHHHHHHTcccHHHHHHcccGGGHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccGGGccHHHHHHHHHHHHHHHHHHHHHHTTccEETTEEcGGGcTTTGGGHHHHHHHHHHHHHHHHcTTHHHHHHHHHHHHHHHHHHHHHHHHcccTGGccHHHHHHHHHHHTHHHHTHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcTccccTTTTTcccHHHHHHHHHccHHHHHHHHHHHHTTcccHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHcTTccTHHHHHHHHHHHccTT DISOP:02AL 1-11| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccc //