[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : kdsA
DDBJ      :kdsA         2-dehydro-3-deoxy-phosphooctonate aldolase
Swiss-Prot:             

Homologs  Archaea  23/68 : Bacteria  695/915 : Eukaryota  17/199 : Viruses  0/175   --->[See Alignment]
c.1.10
:274 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->273 3fs2A PDBj 4e-91 67.1 %
:RPS:PDB   1->274 3e9aA PDBj 2e-53 42.2 %
:RPS:SCOP  2->274 1rzmA  c.1.10.4 * 1e-71 24.4 %
:HMM:SCOP  2->274 1o60A_ c.1.10.4 * 1.3e-105 49.5 %
:RPS:PFM   6->250 PF00793 * DAHP_synth_1 6e-29 35.3 %
:HMM:PFM   10->273 PF00793 * DAHP_synth_1 2.6e-82 36.2 257/272  
:BLT:SWISS 2->273 KDSA_OCHA4 5e-98 65.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21750.1 GT:GENE kdsA GT:PRODUCT 2-dehydro-3-deoxy-phosphooctonate aldolase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 924264..925088 GB:FROM 924264 GB:TO 925088 GB:DIRECTION + GB:GENE kdsA GB:PRODUCT 2-dehydro-3-deoxy-phosphooctonate aldolase GB:PROTEIN_ID AAZ21750.1 GB:DB_XREF GI:71062747 GB:GENE:GENE kdsA LENGTH 274 SQ:AASEQ MSSKKVNCGNIEISNDNKICIIAGPCQLETEQHAMDMAGKIQEITKKLGLGFIYKTSFDKANRTSLKGQRGAGLEASLPVFDKIKKELNVPILTDIHNAEQCSLLKDHVDILQIPAFLCRQTDLLIAAAKTNKIINVKKGQFLAPWDMVNVTKKISDSGNNNILVTERGASFGYNTLVSDMRSLPIMAKNGYPVIFDATHSVQQPGGLGETSGGQREFVEYLARAAVAVGVAGVFIETHQDPDNAPSDGPNMVPLDKLEKLLSQLFEIDNLIKK GT:EXON 1|1-274:0| BL:SWS:NREP 1 BL:SWS:REP 2->273|KDSA_OCHA4|5e-98|65.4|272/277| SEG 225->234|aavavgvagv| BL:PDB:NREP 1 BL:PDB:REP 2->273|3fs2A|4e-91|67.1|255/258| RP:PDB:NREP 1 RP:PDB:REP 1->274|3e9aA|2e-53|42.2|263/275| RP:PFM:NREP 1 RP:PFM:REP 6->250|PF00793|6e-29|35.3|238/278|DAHP_synth_1| HM:PFM:NREP 1 HM:PFM:REP 10->273|PF00793|2.6e-82|36.2|257/272|DAHP_synth_1| GO:PFM:NREP 1 GO:PFM GO:0009058|"GO:biosynthetic process"|PF00793|IPR006218| RP:SCP:NREP 1 RP:SCP:REP 2->274|1rzmA|1e-71|24.4|254/338|c.1.10.4| HM:SCP:REP 2->274|1o60A_|1.3e-105|49.5|273/0|c.1.10.4|1/1|Aldolase| OP:NHOMO 868 OP:NHOMOORG 735 OP:PATTERN ---1---111111111-111-11-------------------------------11-111-111---- 332-------------------------------------------------------------------1--------1111111111111-111---111211111-1111111111111111111111111212221-222412122221--11112-1111123332-1-----1----1111111121111111211211121111111111111111-111111111111111111111111111111----------11----1--121------1111--------------1111111111111----------12112111111121222111111111-13--2111432521322221-22332111111111--1111111111111111111111-1111111111211111111111111111111111111111111111111111111------------1111111111111----1-11-111111211112111111121222222211111211111111111111111111112121111111--111123111111--1111123243333212212-34111111111111111111111111122111111111111111111111111111111--11111------11111111111111111-1111111111111111111111111111111111111111111111111111111111111111111121111111111111111211111111111111111111112111121111121211111111111111112121111111211111111111111111113112222----------1---------------------------1--1-111111 ------------------------------------------------------------------------------------------------------------1------------------------------------------------------1---------11-----1--111113-41--1111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 274 STR:RPRED 100.0 SQ:SECSTR cccccEEETTEEEcTTcccEEEEEEEEcccHHHHHHHHHHHHHHHHHHTccEEEEEEcccTTcccccccccccHHHHHHHHHHHHHHHccEEEEEcccGGGHHHHHTTccEEEEcGGGTTcHHHHHHHHHTTcEEEEEccTTccGGGHHHHHHHHHHTTcccEEEEEccEEcccccEEccTHHHHHHHHHTccEEEEHHHGGEETTTTcccHTccGGGHHHHHHHHHHTcccEEEEEEEccGGGccccGGGcEEGGGHHHHHHHHHHHHHHHHH DISOP:02AL 1-2| PSIPRED ccccEEEEccEEEccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHccEEEEEccccccHHHHHHHccEEEEcccccccHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHHcccccEEEEEcccccccccccccHHHHHHHHHccccEEEEccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEcccHHHccccccccccHHHHHHHHHHHHHHHHHHcc //