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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : kdsB
DDBJ      :kdsB         3-deoxy-manno-octulosonate cytidylyltransferase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  515/915 : Eukaryota  14/199 : Viruses  0/175   --->[See Alignment]
c.68.1
:246 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->242 1vicB PDBj 5e-37 36.5 %
:RPS:PDB   17->242 3duvA PDBj 5e-24 34.7 %
:RPS:SCOP  2->242 1gq9A  c.68.1.13 * 6e-48 31.1 %
:HMM:SCOP  3->242 1vh1A_ c.68.1.13 * 2.1e-38 27.6 %
:RPS:PFM   7->193 PF02348 * CTP_transf_3 3e-19 34.4 %
:HMM:PFM   6->214 PF02348 * CTP_transf_3 1.2e-34 27.3 209/217  
:BLT:SWISS 4->242 KDSB_THEYD 1e-46 45.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21327.1 GT:GENE kdsB GT:PRODUCT 3-deoxy-manno-octulosonate cytidylyltransferase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 491948..492688 GB:FROM 491948 GB:TO 492688 GB:DIRECTION + GB:GENE kdsB GB:PRODUCT 3-deoxy-manno-octulosonate cytidylyltransferase GB:PROTEIN_ID AAZ21327.1 GB:DB_XREF GI:71062324 GB:GENE:GENE kdsB LENGTH 246 SQ:AASEQ MAKTLILIPSRMSASRLPGKPLLTINNLSIISHVFKRAEETNIGEVVVATEDQEILDDVEKNGGRAVLTSNTHKTGTDRIFEAYEKLNIKDIDFILNLQGDEPNINKNDIINLNNFMINSNSGIGTLAAEIKNDKMLIDQNIVKVITETKLEKNNFPIALNFTRDGFSRNDQNIYHHIGIYSYKTSTLKKFVSLDQTFKEKKNRLEQLRALDNDLKINVALANFSPIGVDTKEDYLAIKKIMEYKS GT:EXON 1|1-246:0| BL:SWS:NREP 1 BL:SWS:REP 4->242|KDSB_THEYD|1e-46|45.7|232/255| SEG 104->115|ninkndiinlnn| BL:PDB:NREP 1 BL:PDB:REP 6->242|1vicB|5e-37|36.5|233/248| RP:PDB:NREP 1 RP:PDB:REP 17->242|3duvA|5e-24|34.7|216/233| RP:PFM:NREP 1 RP:PFM:REP 7->193|PF02348|3e-19|34.4|180/212|CTP_transf_3| HM:PFM:NREP 1 HM:PFM:REP 6->214|PF02348|1.2e-34|27.3|209/217|CTP_transf_3| GO:PFM:NREP 1 GO:PFM GO:0009103|"GO:lipopolysaccharide biosynthetic process"|PF02348|IPR003329| RP:SCP:NREP 1 RP:SCP:REP 2->242|1gq9A|6e-48|31.1|235/241|c.68.1.13| HM:SCP:REP 3->242|1vh1A_|2.1e-38|27.6|239/0|c.68.1.13|1/1|Nucleotide-diphospho-sugar transferases| OP:NHOMO 569 OP:NHOMOORG 529 OP:PATTERN -------------------------------------------------------------------- 111--------------------------------------------------------------------------------111111112-211---111111111-111111111111111111111121121----------1--1-----111-------------------1---1--------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------11111111111111--1111111111111111111111-11111111111111111111111111111-11-1--1--1111111111111211------------1111111111111----1----11111121111211111112111111121111121111-111111112111111111111111111111111111111121-1222111111111111-11-11111111111111111111111111111111111111111111121111111111111--11111------11111111112122211-11112121211222112211111111111111111111111111111111111111111111111111111111111111111112111111111111-1111111111111111111111211111111111111212111111111211111121111111111111112222----------------------------------------------111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----1---111122-11--1111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 243 STR:RPRED 98.8 SQ:SECSTR ccccEEEEEEccccccEEcccccEETTEEHHHHHHHHHHTTTccEEEEEEccHHHHHHHTTTTcEcEEcccccccHHHHHHHHHHHTTccTTcEEEEEccccTTccHHHHHHHHHHHHHTTccEEEEEEEcccHHHHTcTTccEEEEcTTccEEEEEccccccHHHHTcccGccEEEEEEEEEEHHHHHHHTTccccHHHHHHTcTTHHHHHTTccEEEEEEcccccccccHHHHHHHHHHHH### DISOP:02AL 245-246| PSIPRED cccEEEEEEcccccccccccccHHHccccHHHHHHHHHHHccccEEEEEcccHHHHHHHHHccccEEEEcHHHcccHHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHcccccEEEEEEEEccHHHHHccccEEEEEccccccccccccccccccccccccccEEEEEEEEEEcHHHHHHHHHccccHHHHHcccHHHHHHHcccEEEEEEEcccccccccHHHHHHHHHHHHccc //