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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : kdtA
DDBJ      :kdtA         3-deoxy-D-manno-octulosonic-acid transferase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  491/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
:420 amino acids
:SECSTR
:PSIPRED
:RPS:PDB   49->396 3dzcA PDBj 1e-06 9.4 %
:RPS:PFM   50->207 PF04413 * Glycos_transf_N 3e-27 34.2 %
:HMM:PFM   31->210 PF04413 * Glycos_transf_N 8.7e-53 31.7 180/186  
:BLT:SWISS 41->404 KDTA_RICFE 4e-51 33.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20971.1 GT:GENE kdtA GT:PRODUCT 3-deoxy-D-manno-octulosonic-acid transferase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 152513..153775 GB:FROM 152513 GB:TO 153775 GB:DIRECTION + GB:GENE kdtA GB:PRODUCT 3-deoxy-D-manno-octulosonic-acid transferase GB:PROTEIN_ID AAZ20971.1 GB:DB_XREF GI:71061968 GB:GENE:GENE kdtA LENGTH 420 SQ:AASEQ MFFLYQIIITLTLIFSPLIIFFRILKKKEDKKRYKEKFCFPSKKRISGNLIWFHGSSVGELLSILPLVQELEKNKSINQILITTSTLSSAQIFKKFNFKKTVHQFFPIDSIFFSYKFLNYWKPTIAIFIESEIWPSIFKIINKKKIPLTLLNARITKKTFDKWRGVKKFSNSVFQNISIAYPQNEETFNYLKKLNVSKVKKIGNLKFFNNQQSKFTKLDKIFLKNINPKKVWCASSTHPGEEIICANTHIKLKKKYKNLLTIIIPRHIHRVSKIVDEIKGLDLNIVLHSSKPKKLNNTDIYLVDTYGETKKFYQSSNIVFMGKSISGNGGQNPLEPTNLGSTVLYGPHVDNFKDTYKLLNKLKIAYKVNGVKSLTQSIDKLITNPNNKKNYLKIAKIGKKILNETKDEINSLFNNEIKKT GT:EXON 1|1-420:0| BL:SWS:NREP 1 BL:SWS:REP 41->404|KDTA_RICFE|4e-51|33.6|357/464| TM:NTM 1 TM:REGION 3->25| SEG 26->37|kkkedkkrykek| RP:PDB:NREP 1 RP:PDB:REP 49->396|3dzcA|1e-06|9.4|341/373| RP:PFM:NREP 1 RP:PFM:REP 50->207|PF04413|3e-27|34.2|158/183|Glycos_transf_N| HM:PFM:NREP 1 HM:PFM:REP 31->210|PF04413|8.7e-53|31.7|180/186|Glycos_transf_N| GO:PFM:NREP 3 GO:PFM GO:0005529|"GO:sugar binding"|PF04413|IPR007507| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF04413|IPR007507| GO:PFM GO:0016740|"GO:transferase activity"|PF04413|IPR007507| OP:NHOMO 504 OP:NHOMOORG 498 OP:PATTERN -------------------------------------------------------------------- -11--------------------------------------------------------------------------------11111111--111---11111111--1111111111111111-----1---11------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------11-11111111111-11111111111111111111111-1111111111111111111111111111111-11112111111111111111111------------1111111111111----1-----1---1111111111111111111111111111111111111111111111111111111111111---11112122-11--11--111111111111111--1111111111111111111111111111111111111111111111111111111111--11111------11111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111221111111111111111111111111111111--1111----------------------------------------------111 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-11-11--11--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 371 STR:RPRED 88.3 SQ:SECSTR ################################################EEEEEEEccHHHHHHHHHHHHHHHHcTTEEEEEEEcccccHHHHHHHHHTTccccEEcccccTTccHHHHHHHHHHHHHHHHHHHcccEHHHHHTTTccEEEETcccccccTTccTTHHHHHHHHHHTccEEEEccHHHHHHHHHTTccGGGEEEcccHHHHHHHHHHHHHHHcHHHHHHHHHTcTTccTTcEEEEEEcccccccTTHHHHHHHHHHHHHHHcTTEEEEEEccccHHHHHHHHHHTTTcTTEEEEccccHHHHHHHHHHHHHHccEEEEcccGGGTTGGGGTccEEEcccGGcccccHHHHHHTcEEEcTTcHHHHHHHHHHHHHcHHHHHHHHTccccccccccccTTTccccccccHHH# PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccEEEEEEccHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHccccEEEEEcccccHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHHHHHccEEEEccHHHHHHHHHcccccEEEcccccccccccccHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHHHccccEEEEcccccccccccEEEEEcHHHHHHHHHHccEEEEcccccccccccHHHHHHHcccEEEccccccHHHHHHHHHHcccEEEcccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //