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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : ksgA
DDBJ      :ksgA         Dimethyladenosine transferase
Swiss-Prot:KSGA_PELUB   RecName: Full=Dimethyladenosine transferase;         EC=2.1.1.-;AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase;AltName: Full=16S rRNA dimethylase;AltName: Full=High level kasugamycin resistance protein ksgA;AltName: Full=Kasugamycin dimethyltransferase;

Homologs  Archaea  56/68 : Bacteria  880/915 : Eukaryota  176/199 : Viruses  0/175   --->[See Alignment]
c.66.1
:262 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   11->253 1qyrA PDBj 4e-29 34.6 %
:RPS:PDB   5->255 2aztA PDBj 4e-14 10.5 %
:RPS:SCOP  11->259 1qyrA  c.66.1.24 * 1e-45 32.5 %
:HMM:SCOP  2->264 1i4wA_ c.66.1.24 * 1.7e-78 43.1 %
:RPS:PFM   5->254 PF00398 * RrnaAD 2e-40 41.4 %
:HMM:PFM   4->258 PF00398 * RrnaAD 6.5e-57 28.7 251/262  
:BLT:SWISS 1->262 KSGA_PELUB e-144 100.0 %
:PROS 34->62|PS01131|RRNA_A_DIMETH
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21529.1 GT:GENE ksgA GT:PRODUCT Dimethyladenosine transferase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(692569..693357) GB:FROM 692569 GB:TO 693357 GB:DIRECTION - GB:GENE ksgA GB:PRODUCT Dimethyladenosine transferase GB:PROTEIN_ID AAZ21529.1 GB:DB_XREF GI:71062526 GB:GENE:GENE ksgA LENGTH 262 SQ:AASEQ MFVKAKKSLGQNFLIDREVLEKIVSITDITNKEVLEIGPGSGNLTTYILKKKPKKLYVVEKDDDLAILLKEKFDTEIKIINDDILKVSESTISDQKLSVFGNLPYNISTEILSKWILNIGSNFWFDSLVLMFQKEVADRIISEFNNSNYGRLSILSSWKLNVKKILDIKPQSFSPRPKIDSSLLLFTPKENFFKLKDPKNLEKITRIFFSQRRKMLKKPFNQVFDNGKEVAEKFGIDLNLRPQNLEPDVYFKLVKEYEDLRG GT:EXON 1|1-262:0| SW:ID KSGA_PELUB SW:DE RecName: Full=Dimethyladenosine transferase; EC=2.1.1.-;AltName: Full=S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase;AltName: Full=16S rRNA dimethylase;AltName: Full=High level kasugamycin resistance protein ksgA;AltName: Full=Kasugamycin dimethyltransferase; SW:GN Name=ksgA; OrderedLocusNames=SAR11_0710; SW:KW Antibiotic resistance; Complete proteome; Methyltransferase;RNA-binding; rRNA processing; S-adenosyl-L-methionine; Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->262|KSGA_PELUB|e-144|100.0|262/262| GO:SWS:NREP 5 GO:SWS GO:0046677|"GO:response to antibiotic"|Antibiotic resistance| GO:SWS GO:0008168|"GO:methyltransferase activity"|Methyltransferase| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0006364|"GO:rRNA processing"|rRNA processing| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| PROS 34->62|PS01131|RRNA_A_DIMETH|PDOC00871| SEG 50->55|kkkpkk| BL:PDB:NREP 1 BL:PDB:REP 11->253|1qyrA|4e-29|34.6|237/252| RP:PDB:NREP 1 RP:PDB:REP 5->255|2aztA|4e-14|10.5|248/276| RP:PFM:NREP 1 RP:PFM:REP 5->254|PF00398|2e-40|41.4|244/256|RrnaAD| HM:PFM:NREP 1 HM:PFM:REP 4->258|PF00398|6.5e-57|28.7|251/262|RrnaAD| GO:PFM:NREP 3 GO:PFM GO:0000154|"GO:rRNA modification"|PF00398|IPR001737| GO:PFM GO:0000179|"GO:rRNA (adenine-N6,N6-)-dimethyltransferase activity"|PF00398|IPR001737| GO:PFM GO:0008649|"GO:rRNA methyltransferase activity"|PF00398|IPR001737| RP:SCP:NREP 1 RP:SCP:REP 11->259|1qyrA|1e-45|32.5|243/252|c.66.1.24| HM:SCP:REP 2->264|1i4wA_|1.7e-78|43.1|260/0|c.66.1.24|1/1|S-adenosyl-L-methionine-dependent methyltransferases| OP:NHOMO 1257 OP:NHOMOORG 1112 OP:PATTERN --1111-1-------11111111111111111111111111111111111111111111111111--1 111-1-111111--11111-1111111111111111-1111---1--111--1-11-1111---1111111111111111-111111111111111-111111111111111111111111111111111111111---1-111111111111111111111111111111111111111111111111111111111111111111112211111111111211111111112361311112333111142121111111111111111111111111111111111111142211111111111112111111111121111111111111111111311111111111111111111-111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111121111111111111111111111111111111111----11111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111-11111111111111111111111111111111 22-1221-411122111111111111-11-1111111111111---1111--1-11-1-11-111111111111111-1111111111-12111-1111111122212-2432223-211112222-11272-2221--2211311221121231222211221221423-42222122F2221222231322222123 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 260 STR:RPRED 99.2 SQ:SECSTR HEEEHHHHHTccccccHHHHHHHHHHHHHTccEEEEcccTTcHHHHHHHHHTcEEEEEEccHHHHHHHHHHHHHTTTcHHHHHcEEEEccGGGHHHHccccccEEEEEEccccGGGccccccccHHcccHHHHHHHHHHTEEEEEEEEEEEEcHHHHHHHTccccccccccccccccEEEEEEEEETTEEEEEEEEEEccccEEEEEEccccHHHHHHHHHHHHTTcEEEEEEETTEEccTTccccccEEEEEEEHHHHH## DISOP:02AL 1-4| PSIPRED cccccccccccEEEccHHHHHHHHHHHccccccEEEEcccccHHHHHHHHHcccEEEEEEccHHHHHHHHHHccccEEEEEccEEcccHHHcccccEEEEEEccccccHHHHHHHHHHccccccccEEEEEEHHHHHHHHcccccccHHHHHHHHHHHHHcEEEEEEEccccccccccEEEEEEEEEEcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcc //