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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : lepA
DDBJ      :lepA         GTP-Binding protein lepA
Swiss-Prot:LEPA_PELUB   RecName: Full=GTP-binding protein lepA;

Homologs  Archaea  68/68 : Bacteria  912/915 : Eukaryota  198/199 : Viruses  0/175   --->[See Alignment]
a.71.1b.43.3c.37.1d.58.11
:602 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->546 3degC PDBj e-155 52.5 %
:RPS:PDB   19->558 3cb4D PDBj 7e-78 44.7 %
:RPS:SCOP  1->175 1n0uA2  c.37.1.8 * 1e-36 35.2 %
:RPS:SCOP  160->284 1n0uA1  b.43.3.1 * 7e-13 10.4 %
:RPS:SCOP  295->373 1fnmA4  d.58.11.1 * 3e-04 18.4 %
:RPS:SCOP  404->524 1n0uA5  d.58.11.1 * 1e-28 21.2 %
:RPS:SCOP  495->557 1g7dA  a.71.1.1 * 2e-05 8.1 %
:HMM:SCOP  2->209 1f60A3 c.37.1.8 * 6.1e-61 37.4 %
:HMM:SCOP  168->291 2bv3A1 b.43.3.1 * 1.6e-30 35.8 %
:HMM:SCOP  293->373 1wdtA5 d.58.11.1 * 3.8e-19 36.4 %
:HMM:SCOP  401->497 1wdtA4 d.58.11.1 * 1.2e-24 36.5 %
:RPS:PFM   7->179 PF00009 * GTP_EFTU 1e-28 40.5 %
:RPS:PFM   404->478 PF00679 * EFG_C 4e-11 40.5 %
:RPS:PFM   490->599 PF06421 * LepA_C 3e-30 56.0 %
:HMM:PFM   6->184 PF00009 * GTP_EFTU 2.1e-52 41.5 176/189  
:HMM:PFM   490->598 PF06421 * LepA_C 8.6e-45 62.0 108/109  
:HMM:PFM   402->485 PF00679 * EFG_C 9.9e-23 32.5 83/89  
:HMM:PFM   208->278 PF03144 * GTP_EFTU_D2 1.3e-10 26.8 71/74  
:BLT:SWISS 1->602 LEPA_PELUB 0.0 100.0 %
:PROS 45->60|PS00301|EFACTOR_GTP
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21266.1 GT:GENE lepA GT:PRODUCT GTP-Binding protein lepA GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 438405..440213 GB:FROM 438405 GB:TO 440213 GB:DIRECTION + GB:GENE lepA GB:PRODUCT GTP-Binding protein lepA GB:PROTEIN_ID AAZ21266.1 GB:DB_XREF GI:71062263 GB:GENE:GENE lepA LENGTH 602 SQ:AASEQ MTKIDHIRNFAIIAHIDHGKSTIADRIIHSCGGLTEREMKAQVLDSMDIERERGITIKAQTVKLNYKAKDGKDYILNIIDTPGHVDFSYEVSRSLYACEGSILIVDSTQGVEAQTLANVYQALDTKHEIVPVLNKVDLPASDLEKTKKQIEEVIGIDTENAIPCSGKTGEGIEDILEQIIVSLPAPEGEKDADLKCLLVDSWYDTYLGVVILVRVINGKISKNMKIKMMSTDQEYIIEKVGVFTPKATDVNELNAGEIGFITTGIKILSETKVGDTICDATKPPQEALPGFKPSKPVVFCGLFPVDSSEYQKLKDGLGKLQLNDASFSYEAESSSALGLGFRCGFLGLLHLEIITERLEREFDINLLTTTPGVVYKVHMNKGDIIELQNPSSLPEPTLIKFIEEPWIKATIITPDQYLGAIIKVCQDKRGVQTNLSYSGNRAVLNYEIPLNEVVFDFNDRLKSMTSGYASFDYEIIGHREGDLVKLGILVNAEPVDALSMMVHKDFAQTVGREVCEKLKDLIPRHNFMIPVQAAIGGKIIARETIKGFKKDVLTKIHGGGARDRKRKLLDKQKKGKARGKQFGKVEIPQEAFIGVLKINKDQ GT:EXON 1|1-602:0| SW:ID LEPA_PELUB SW:DE RecName: Full=GTP-binding protein lepA; SW:GN Name=lepA; OrderedLocusNames=SAR11_0444; SW:KW Complete proteome; GTP-binding; Nucleotide-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->602|LEPA_PELUB|0.0|100.0|602/602| GO:SWS:NREP 2 GO:SWS GO:0005525|"GO:GTP binding"|GTP-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| PROS 45->60|PS00301|EFACTOR_GTP|PDOC00273| SEG 216->230|ingkisknmkikmms| SEG 311->322|qklkdglgklql| SEG 325->351|asfsyeaesssalglgfrcgflgllhl| SEG 560->578|gardrkrklldkqkkgkar| BL:PDB:NREP 1 BL:PDB:REP 6->546|3degC|e-155|52.5|541/545| RP:PDB:NREP 1 RP:PDB:REP 19->558|3cb4D|7e-78|44.7|521/525| RP:PFM:NREP 3 RP:PFM:REP 7->179|PF00009|1e-28|40.5|168/183|GTP_EFTU| RP:PFM:REP 404->478|PF00679|4e-11|40.5|74/88|EFG_C| RP:PFM:REP 490->599|PF06421|3e-30|56.0|109/109|LepA_C| HM:PFM:NREP 4 HM:PFM:REP 6->184|PF00009|2.1e-52|41.5|176/189|GTP_EFTU| HM:PFM:REP 490->598|PF06421|8.6e-45|62.0|108/109|LepA_C| HM:PFM:REP 402->485|PF00679|9.9e-23|32.5|83/89|EFG_C| HM:PFM:REP 208->278|PF03144|1.3e-10|26.8|71/74|GTP_EFTU_D2| GO:PFM:NREP 3 GO:PFM GO:0003924|"GO:GTPase activity"|PF00009|IPR000795| GO:PFM GO:0005525|"GO:GTP binding"|PF00009|IPR000795| GO:PFM GO:0005525|"GO:GTP binding"|PF00679|IPR000640| RP:SCP:NREP 5 RP:SCP:REP 1->175|1n0uA2|1e-36|35.2|165/323|c.37.1.8| RP:SCP:REP 160->284|1n0uA1|7e-13|10.4|125/138|b.43.3.1| RP:SCP:REP 295->373|1fnmA4|3e-04|18.4|76/79|d.58.11.1| RP:SCP:REP 404->524|1n0uA5|1e-28|21.2|113/114|d.58.11.1| RP:SCP:REP 495->557|1g7dA|2e-05|8.1|62/106|a.71.1.1| HM:SCP:REP 2->209|1f60A3|6.1e-61|37.4|203/239|c.37.1.8|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 168->291|2bv3A1|1.6e-30|35.8|120/0|b.43.3.1|1/1|Translation proteins| HM:SCP:REP 293->373|1wdtA5|3.8e-19|36.4|77/0|d.58.11.1|1/1|EF-G C-terminal domain-like| HM:SCP:REP 401->497|1wdtA4|1.2e-24|36.5|96/0|d.58.11.1|1/1|EF-G C-terminal domain-like| OP:NHOMO 6716 OP:NHOMOORG 1178 OP:PATTERN 22222222222222221221121222222222222113222222222222222422222222222121 3333575455566443333-3633353333336666457733335434555444453455445534565454666565435433434354542544312544454645643333333333333355555556655633333443336564665454555545666445555565555565555555223344345555555545555556344445554446545555555675555555555555545555546656656656666666465556545655444454444455545545444444444443446655585645768766666665558466666676855466737746355534545533454566655544544565555555554444444444414444444444536555674556445555544544544445555555554454555333333333344333433333333333333545456665655565555455556655555555686664566655444565455555565445444444445544655555555455555479775686766666656533333343434444444445544344666766657577777777677775667776215565544455555665756666666666-66666666666666666666665745445544454444444447666666662755555555555335655555555574656545555555545555555455555557666676665777765555665566564666666665656666644444444555545446667664444454433322225-33433332222433433333434444434644 AB13BA72RE94AAA89997AAA789AAA99998999A89799979778798876589999998668738885787A489698888BC-AC89AAA6667788CEG2BDIGDKBBFE76688A8HF4J6S*E2FFJ66A6K48F786756D66J7G88FAKk8C8A8G89TLBBB88BA*CAB8ASJXU7HGDDBCA8A ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 593 STR:RPRED 98.5 SQ:SECSTR ccccTTEEEEEEEcccccEEEEEEcccccHcccccccccccccHHHHHHHHTTccEEEEEEEcTTcccTTccEEEEEEEEccccGGGHHHHHHHHHHccEEEEEEETTTcccTHHHHHHHHHHHTTcEEEEEEEcTTcTTccHHHHHHHHHHHTccccTTcEEEcTTTcTTHHHHHHHHHHHcccccccTTcccEEEEEEEEEETTTEEEEEEEEEEccEEcccEEEETTTccEEEccEEEEEcccEEEccEEcTTcEEEEEcccccGGGccTTcEEEEcccccccccTTcccccccEEEEEEEccGGGHHHHHHHHHHHHTTccccEEEEEEETTTEEEEEEEEccHHHHHHHHHHHHHTccccEEEcccEEcEEEEEccccEEEEccGGGcccGGGEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTcEEEEEEccTTEEEEEEEEEHHHHHTTTHHHHHHHTTcccEEEEEEEEEEEccEEEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHHHHcccccccEEEEEEETTEEEEEEEEccccTTcccccccH##HHTTTcEEEEEEEcTTcccEEEEEEEEGGGcccH####### DISOP:02AL 1-3, 308-312, 570-578, 600-602| PSIPRED ccccccccEEEEEEEccccHHHHHHHHHHHHccccccccHHHHccccHHHHHcccEEEEEEEEEEEEccccccEEEEEEEccccccHHHHHHHHHHHHccEEEEEEccccccHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccccEEEEEEEEEEEEccccEEEEEccccEEEEEEEEEEccccEEccccccccEEEEEEEEccccccccccEEEccccccccccccccccccEEEEEEEEccHHHHHHHHHHHHHHHHcccEEEEEEccccccEEEEEEEEEcHHHHHHHHHHHHHHccccEEEcccEEEEEEEEcccEEEEEEcHHHcccccccccccccEEEEEEEEccccccHHHHHHHHcccEEEEEEEcccEEEEEEEccccccHHHHHHHHHHccccEEEEEEEEccccccccEEEEEEEEcccccEEEEEEEHHHHHHHHHHHHHHHHHHccHHcccEEEEEEEccEEEEEccccHHHHccHHEEEccccHHHHHHHHHHHHHHHHHHHccccEEccHHHHHHHHcccccc //