[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : ligA
DDBJ      :ligA         DNA ligase
Swiss-Prot:DNLJ_PELUB   RecName: Full=DNA ligase;         EC=6.5.1.2;AltName: Full=Polydeoxyribonucleotide synthase [NAD+];

Homologs  Archaea  6/68 : Bacteria  902/915 : Eukaryota  13/199 : Viruses  2/175   --->[See Alignment]
a.60.2b.40.4c.15.1d.142.2
:676 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   19->582 2owoA PDBj e-111 40.1 %
:BLT:PDB   605->672 2k6gA PDBj 3e-09 41.2 %
:RPS:PDB   1->674 1dgtB PDBj e-138 33.3 %
:RPS:SCOP  15->310 1b04A  d.142.2.2 * 3e-63 40.3 %
:RPS:SCOP  325->385 1dgsA2  b.40.4.6 * 1e-13 55.7 %
:RPS:SCOP  399->584 1dgsA1  a.60.2.2 * 1e-23 30.2 %
:RPS:SCOP  604->674 1cdzA  c.15.1.1 * 1e-11 11.3 %
:HMM:SCOP  2->313 1b04A_ d.142.2.2 * 9.2e-95 42.8 %
:HMM:SCOP  312->397 1dgsA2 b.40.4.6 * 1.4e-27 51.2 %
:HMM:SCOP  398->584 1dgsA1 a.60.2.2 * 3.7e-42 35.9 %
:HMM:SCOP  593->674 1l7bA_ c.15.1.2 * 1.2e-13 35.0 %
:RPS:PFM   19->310 PF01653 * DNA_ligase_aden 4e-71 46.5 %
:RPS:PFM   325->390 PF03120 * DNA_ligase_OB 3e-25 72.7 %
:RPS:PFM   604->669 PF00533 * BRCT 5e-05 39.1 %
:HMM:PFM   10->312 PF01653 * DNA_ligase_aden 7.1e-101 45.3 298/315  
:HMM:PFM   317->395 PF03120 * DNA_ligase_OB 1.3e-32 59.5 79/82  
:HMM:PFM   596->671 PF00533 * BRCT 2.3e-14 28.0 75/78  
:HMM:PFM   402->427 PF03119 * DNA_ligase_ZBD 2.5e-05 35.0 20/28  
:BLT:SWISS 1->676 DNLJ_PELUB 0.0 100.0 %
:PROS 119->148|PS01055|DNA_LIGASE_N1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20841.1 GT:GENE ligA GT:PRODUCT DNA ligase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(17539..19569) GB:FROM 17539 GB:TO 19569 GB:DIRECTION - GB:GENE ligA GB:PRODUCT DNA ligase GB:PROTEIN_ID AAZ20841.1 GB:DB_XREF GI:71061838 GB:GENE:GENE ligA LENGTH 676 SQ:AASEQ MNDKDLEIEYLKKIDLFQRHNKHYYDKNKPIVSDQEFDLLKKDIIDLERKYKFLKSEYSPTKSIGFKPSKNFQKIKHKVPMLSLGNAFNEEDLKNFEKKIINFLSLKDVNTIEYSAEPKIDGISASLIYIDGKLTKGLSRGDGNEGEDITQNLKTIKDIPLEITKSNFPKEIDIRGEVFIENNDFKKIKDKFANPRNAASGSLRQKNSLITAKIPLKFIAYTYGYEKKMNIKNQTSFLENLKLWGFKTNPFNKKIIGVKNLMLNHKELEEKRKELAFDIDGIVYKVNDFDLQKRLGFAANAPRWAIAHKFSANSSISEIMNIEIQIGRTGALTPVAKIKPVNIGGVIVSNATLHNEDEIVRKDIRVGDTVTVERAGDVIPHVVSVDLKKRKQNSKKFIFPLKCPSCGSKTIKDYNETTKRQDAVRRCASEGFECEKIAIERIKHFVSKDAFNIDGFGKKIVENFWNLKLVRLPQDIFKLNYNKIEELEGWGKLSVANLRFSIEEKKNISLERFIYSLGIRHIGQENAKLIARHLKTASNFFRLSGEKNIESLSNIDGIGITQIQSIKKFFLNKTNLKVLSELEKNLLIKDVILINNNGLLKNKTFMLTGKLNGISRAEAKSLIEQNSGKIISNVNKKLDYLIAGDKPTLKKINTAKEWNIKIINQTEWLKMLNKSG GT:EXON 1|1-676:0| SW:ID DNLJ_PELUB SW:DE RecName: Full=DNA ligase; EC=6.5.1.2;AltName: Full=Polydeoxyribonucleotide synthase [NAD+]; SW:GN Name=ligA; OrderedLocusNames=SAR11_0016; SW:KW Complete proteome; DNA damage; DNA repair; DNA replication; Ligase;Magnesium; Manganese; Metal-binding; NAD; Zinc. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->676|DNLJ_PELUB|0.0|100.0|676/676| GO:SWS:NREP 5 GO:SWS GO:0006974|"GO:response to DNA damage stimulus"|DNA damage| GO:SWS GO:0006281|"GO:DNA repair"|DNA repair| GO:SWS GO:0006260|"GO:DNA replication"|DNA replication| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| PROS 119->148|PS01055|DNA_LIGASE_N1|PDOC00809| SEG 311->324|sanssiseimniei| SEG 592->603|ilinnngllknk| BL:PDB:NREP 2 BL:PDB:REP 19->582|2owoA|e-111|40.1|551/586| BL:PDB:REP 605->672|2k6gA|3e-09|41.2|68/109| RP:PDB:NREP 1 RP:PDB:REP 1->674|1dgtB|e-138|33.3|648/660| RP:PFM:NREP 3 RP:PFM:REP 19->310|PF01653|4e-71|46.5|288/314|DNA_ligase_aden| RP:PFM:REP 325->390|PF03120|3e-25|72.7|66/82|DNA_ligase_OB| RP:PFM:REP 604->669|PF00533|5e-05|39.1|64/76|BRCT| HM:PFM:NREP 4 HM:PFM:REP 10->312|PF01653|7.1e-101|45.3|298/315|DNA_ligase_aden| HM:PFM:REP 317->395|PF03120|1.3e-32|59.5|79/82|DNA_ligase_OB| HM:PFM:REP 596->671|PF00533|2.3e-14|28.0|75/78|BRCT| HM:PFM:REP 402->427|PF03119|2.5e-05|35.0|20/28|DNA_ligase_ZBD| GO:PFM:NREP 5 GO:PFM GO:0003911|"GO:DNA ligase (NAD+) activity"|PF01653|IPR013839| GO:PFM GO:0003911|"GO:DNA ligase (NAD+) activity"|PF03120|IPR004150| GO:PFM GO:0006260|"GO:DNA replication"|PF03120|IPR004150| GO:PFM GO:0006281|"GO:DNA repair"|PF03120|IPR004150| GO:PFM GO:0005622|"GO:intracellular"|PF00533|IPR001357| RP:SCP:NREP 4 RP:SCP:REP 15->310|1b04A|3e-63|40.3|288/310|d.142.2.2| RP:SCP:REP 325->385|1dgsA2|1e-13|55.7|61/86|b.40.4.6| RP:SCP:REP 399->584|1dgsA1|1e-23|30.2|172/181|a.60.2.2| RP:SCP:REP 604->674|1cdzA|1e-11|11.3|71/96|c.15.1.1| HM:SCP:REP 2->313|1b04A_|9.2e-95|42.8|304/312|d.142.2.2|1/1|DNA ligase/mRNA capping enzyme, catalytic domain| HM:SCP:REP 312->397|1dgsA2|1.4e-27|51.2|86/86|b.40.4.6|1/1|Nucleic acid-binding proteins| HM:SCP:REP 398->584|1dgsA1|3.7e-42|35.9|170/181|a.60.2.2|1/1|RuvA domain 2-like| HM:SCP:REP 593->674|1l7bA_|1.2e-13|35.0|80/92|c.15.1.2|1/1|BRCT domain| OP:NHOMO 1029 OP:NHOMOORG 923 OP:PATTERN ------------------------1--11111------------------------------------ 1111111111111111-11-11111111111111112111111111111111121111111111211122111111111111111111111111111--1111111111111111111111111111111121111111111111111111111111111111111111111111-111111121111--111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111121222222212111111111111111111111111111111111111111111111111111111111111111111111111-11112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111111111111111111211112111111112111111111111111111-11111-1111122221222222222222-222222222222222222122222221222222222221212211-1222211222222222222111111111111111121111111111111111111111111111111111222221212111111111111111111111111111111111111111111111111111111111111111111-11111111111111211111111111111121 -1--11--------------------------------------------------------------------------------------------------------------------------------------------------------------------------1114111--1------11----- ----------------------------------------------------------------------------------------------------------------------------------------------------------------1---------1---- STR:NPRED 676 STR:RPRED 100.0 SQ:SECSTR ccGGGHHHHHHHHHHHHHHHHHHHHTTccccccTTHHHHHHHHHHHHHHHcGGGccTTcGGGccTTcccccccEEEcccccccccEEccHHHHHHHHHTHHHHTccccccccEEEEEEEcccEEEEEEEETTEEEEEEEcccccEEEccHHHHTTcTTccccccccccccEEEEEEEEEccHHHHHHHHHHcccHHHHHHHHHccccTHHHHccccEEEEEEEccccccccccHHHHHHHHHHHTccccccEEEEEHHHHHHHHHHHHHHTGGGccccccEEEEEEccGGGTTTccccccccccEEEEEccccEEEEEccEEEEEEcTTccEEEEEEEEEEEccccEEEEEEccccTTTTTTTccTTcEEEEEcTTccccEEEEEcTTcccccccccccccccTTTcccHHHHHTTcccccccccccccTTTTcTTcHHHHHHHHccTTccccTTccHHHHHHHHTTTccccTTTTcccccHHHHTTcccccHHHHHHHHHHHTGGGccHHHHHHHHTcTTccTTHHHHHHHHHccHHHHHcccHTccHHHHcccccccHHHHHHHHHHHHcHHHHHHHHHHHTTTcccccHccccccTTcccccccccccccccTTHHHHcccccccccccccccccccccccTTTcHccccccTTTccccccccccTTTTTcTT DISOP:02AL 1-4| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHcccHHHHHHHHHHHHHHHcccccccEEEEEEEccccEEEEEEEEccEEEEEEEccccccccHHHHHHHHHHHHHccccccccccEEEEEcEEEEcHHHHHHHHHccccHHHHHHcHHHcccHHHHHHcccEEEEEEEcccccccHHHHHHHHHHHHHcccccccccEEEccHHHHHHHHHHHHHHcccccccccEEEEEEccHHHHHHcccEEccccEEEEEEccccEEEEEEEEEEEEEcccEEEEEEEEEEEEEEccEEEEEEEcccHHHHHHcccccccEEEEEEcccccHHHHcccccccccccccEEccccccccccEEccccccccccccEEEEEcccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccHHHHHcccHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHccHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccccccccccccEEEEEEccccccHHHHHHHHHHcccEEEEcccccccEEEEcccccHHHHHHHHHHccEEEcHHHHHHHHHHcc //