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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : livM2
DDBJ      :livM2        probable high-affinity branched-chain amino acid transport permease protein
Swiss-Prot:             

Homologs  Archaea  13/68 : Bacteria  269/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
:342 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   172->284 PF02653 * BPD_transp_2 9e-09 34.9 %
:HMM:PFM   23->307 PF02653 * BPD_transp_2 3.2e-28 24.7 255/267  
:BLT:SWISS 176->314 LIVM_METJA 4e-06 31.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22162.1 GT:GENE livM2 GT:PRODUCT probable high-affinity branched-chain amino acid transport permease protein GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1293666..1294694) GB:FROM 1293666 GB:TO 1294694 GB:DIRECTION - GB:GENE livM2 GB:PRODUCT probable high-affinity branched-chain amino acid transport permease protein GB:PROTEIN_ID AAZ22162.1 GB:DB_XREF GI:71063159 GB:GENE:GENE livM2 LENGTH 342 SQ:AASEQ MGLIIFGLAGAFIFPAYKLQMSFLYILIVLAMTWDVQGGQMGYNTFGNILFFGVGMYVASSTQIAMFFSLAEWTDAGGEKTFVHTVPQFFQGFGVGILLAGIIPTIIAGVIGYGILGLRGHYFAICTLALGIAAGEIAGGIEIIGAGQGMTVPVWPKDLGSNASSSQFMYYLSFGLAVITFITLKWAYSTRFGLILNAIRDNEDKAEAMGIHTMRYKIIGWMVSAFFVGIAGGLMGHINGYIEPNEIAFAGPTFGVFMVLMAILGGKGTLWGPLVGAVLFHLFKEGFWTYFLGWQYVALGVLIIVIVVYFPEGLMGWLREKYPERFGEVIDEADRKAQVELK GT:EXON 1|1-342:0| BL:SWS:NREP 1 BL:SWS:REP 176->314|LIVM_METJA|4e-06|31.6|136/345| TM:NTM 9 TM:REGION 1->15| TM:REGION 21->38| TM:REGION 48->70| TM:REGION 90->112| TM:REGION 123->145| TM:REGION 174->196| TM:REGION 218->240| TM:REGION 253->275| TM:REGION 294->316| SEG 128->147|lalgiaageiaggieiigag| SEG 303->308|iivivv| RP:PFM:NREP 1 RP:PFM:REP 172->284|PF02653|9e-09|34.9|106/271|BPD_transp_2| HM:PFM:NREP 1 HM:PFM:REP 23->307|PF02653|3.2e-28|24.7|255/267|BPD_transp_2| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF02653|IPR001851| GO:PFM GO:0006810|"GO:transport"|PF02653|IPR001851| GO:PFM GO:0016020|"GO:membrane"|PF02653|IPR001851| OP:NHOMO 588 OP:NHOMOORG 284 OP:PATTERN 11-----------------111122---4-12---------------1----------------3--- ---11---------1------1---2-------111-1--1---1-----------------1---2111------------2----------------------11--------------------------2---1113111-32--2-------1-11-11-1-111-1--1111--1-132-------------------------1--------21-1--------32-------------------------------------------------------------------------------------------11-2------------------1-1--1-------11--11----11---1----------11A8A2-46455411-11111-1--2342-635121-311114343211671--3151122312111111112----4-------------------------------2-----28715344463222223342222223439345212332333--45A799-31-1-1-------------1518421-312--11312121122-1--1-11-71---------1------------------11121---1------------1--1-1-----1-1------11-1-11------------------------------11111-------------------1---------111111111111--------------2112---------------------1----1----1111211112211--------------------1---------------------------------------------------------------2-2---1------ -------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------3---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 327-342| PSIPRED HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEEcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccEEEc //