[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : lon
DDBJ      :lon          ATP-dependent protease La
Swiss-Prot:             

Homologs  Archaea  35/68 : Bacteria  700/915 : Eukaryota  189/199 : Viruses  1/175   --->[See Alignment]
a.111.1b.122.1c.37.1d.14.1
:794 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   5->103 2aneH PDBj 7e-29 58.6 %
:BLT:PDB   196->320 1qhtA PDBj 4e-04 31.6 %
:BLT:PDB   320->442 2r62A PDBj 4e-08 36.8 %
:BLT:PDB   488->580 1qzmA PDBj 5e-17 45.2 %
:BLT:PDB   589->770 1rr9F PDBj 4e-62 60.4 %
:RPS:PDB   5->110 2aneA PDBj 1e-26 54.7 %
:RPS:PDB   206->686 2a5yB PDBj 1e-49 12.1 %
:RPS:SCOP  9->180 1zboA1  b.122.1.10 * 2e-33 15.8 %
:RPS:SCOP  178->496 1qhbA  a.111.1.2 * 1e-38 9.0 %
:RPS:SCOP  488->580 1qzmA  c.37.1.20 * 6e-11 44.1 %
:RPS:SCOP  588->770 1xhkA  d.14.1.10 * 2e-46 30.9 %
:HMM:SCOP  6->199 1zboA1 b.122.1.10 * 2.8e-40 28.6 %
:HMM:SCOP  299->584 1ksfX3 c.37.1.20 * 6.2e-52 28.7 %
:HMM:SCOP  591->771 1rreA_ d.14.1.10 * 1e-59 40.9 %
:RPS:PFM   9->199 PF02190 * LON 2e-23 37.0 %
:RPS:PFM   351->444 PF00004 * AAA 3e-08 37.6 %
:RPS:PFM   586->767 PF05362 * Lon_C 4e-58 58.8 %
:HMM:PFM   565->768 PF05362 * Lon_C 3.1e-96 60.8 204/205  
:HMM:PFM   9->198 PF02190 * LON 5.2e-40 32.8 189/207  
:HMM:PFM   349->485 PF00004 * AAA 1.4e-23 32.8 116/130  
:HMM:PFM   312->371 PF08298 * AAA_PrkA 7.6e-08 33.3 60/358  
:HMM:PFM   143->275 PF02862 * DDHD 0.00037 17.3 133/227  
:BLT:SWISS 10->793 LON_BRUAB 0.0 59.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21697.1 GT:GENE lon GT:PRODUCT ATP-dependent protease La GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 846722..849106 GB:FROM 846722 GB:TO 849106 GB:DIRECTION + GB:GENE lon GB:PRODUCT ATP-dependent protease La GB:NOTE Lon GB:PROTEIN_ID AAZ21697.1 GB:DB_XREF GI:71062694 GB:GENE:GENE lon LENGTH 794 SQ:AASEQ MMDVKIERPLLPLRDIVVFPNMVVPLFVGRDKSIAALNEVMKKDKKIVLVTQKNSEIDDPKKTDVFMYGCEGNILQLLKLPDGTVKVLVEGSKRVKILDFKDNEKFIICEYAHHHDVVTKDEDLIPLAMTAVRRLEKLTSINKKVSSETINNIKKLTNASHIADNIASHLTATISEKQQIFETIDVKKRLNSIIKIMENETSIIGVEKRIRGRVKTQMEKTQREYYLNEQLKAIQKELGEIEDGKDETSSLNKLIIKAKMPKDVEKKCMAELKKLKNMSPMSAEATVIRNYLDWMTDLPWYKKSQVDIDLKKALAVLDADHFGLEKVKERIIEFLAVQKRMEKIKGPILCLVGPPGVGKTSLGKSIAKATNREFVRVSVGGMRDEAEIRGHRRTYIGSLPGKIIQMMKKAGTKNPLILLDEIDKIGNDYRGDPSSALLEALDPEQNTTFNDHYLEVDYDLSDVMFVTTANTLNILPPLLDRMEVIRLAGYTEDEKISIANKYLLPKQVKDNGVKENEMTLSEDIIKEIIQSYTKESGVRNLEREISKVARKVVKKVVSGEEKEVKIDLKNLPDYLGIQKFKFGELESKDKIGVVTGLAWTEYGGEILKIETVIMPGKGRMQITGKLGEVMQESIKAAKSFIRSKSLDYGIIPPLFEKKDFHIHVPEGATPKDGPSAGIGMVTSIVSAITNNPVRRDVAMTGEVTLTGQVLPIGGLKEKLLAAHRAGIKQVIIPKENEKDLVDMPKKIIDDIKITPVEQADEVLKIALTKELKRVEWVEVEKISQSNDKSQASIQ GT:EXON 1|1-794:0| BL:SWS:NREP 1 BL:SWS:REP 10->793|LON_BRUAB|0.0|59.8|784/812| SEG 547->565|kvarkvvkkvvsgeekevk| SEG 745->753|kkiiddiki| BL:PDB:NREP 5 BL:PDB:REP 5->103|2aneH|7e-29|58.6|99/109| BL:PDB:REP 196->320|1qhtA|4e-04|31.6|114/710| BL:PDB:REP 320->442|2r62A|4e-08|36.8|114/249| BL:PDB:REP 488->580|1qzmA|5e-17|45.2|93/94| BL:PDB:REP 589->770|1rr9F|4e-62|60.4|182/182| RP:PDB:NREP 2 RP:PDB:REP 5->110|2aneA|1e-26|54.7|106/110| RP:PDB:REP 206->686|2a5yB|1e-49|12.1|464/501| RP:PFM:NREP 3 RP:PFM:REP 9->199|PF02190|2e-23|37.0|189/203|LON| RP:PFM:REP 351->444|PF00004|3e-08|37.6|85/123|AAA| RP:PFM:REP 586->767|PF05362|4e-58|58.8|182/186|Lon_C| HM:PFM:NREP 5 HM:PFM:REP 565->768|PF05362|3.1e-96|60.8|204/205|Lon_C| HM:PFM:REP 9->198|PF02190|5.2e-40|32.8|189/207|LON| HM:PFM:REP 349->485|PF00004|1.4e-23|32.8|116/130|AAA| HM:PFM:REP 312->371|PF08298|7.6e-08|33.3|60/358|AAA_PrkA| HM:PFM:REP 143->275|PF02862|0.00037|17.3|133/227|DDHD| GO:PFM:NREP 6 GO:PFM GO:0004176|"GO:ATP-dependent peptidase activity"|PF02190|IPR003111| GO:PFM GO:0006508|"GO:proteolysis"|PF02190|IPR003111| GO:PFM GO:0005524|"GO:ATP binding"|PF00004|IPR003959| GO:PFM GO:0004176|"GO:ATP-dependent peptidase activity"|PF05362|IPR008269| GO:PFM GO:0004252|"GO:serine-type endopeptidase activity"|PF05362|IPR008269| GO:PFM GO:0006508|"GO:proteolysis"|PF05362|IPR008269| RP:SCP:NREP 4 RP:SCP:REP 9->180|1zboA1|2e-33|15.8|171/197|b.122.1.10| RP:SCP:REP 178->496|1qhbA|1e-38|9.0|289/595|a.111.1.2| RP:SCP:REP 488->580|1qzmA|6e-11|44.1|93/94|c.37.1.20| RP:SCP:REP 588->770|1xhkA|2e-46|30.9|178/185|d.14.1.10| HM:SCP:REP 6->199|1zboA1|2.8e-40|28.6|192/0|b.122.1.10|1/1|PUA domain-like| HM:SCP:REP 299->584|1ksfX3|6.2e-52|28.7|265/319|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 591->771|1rreA_|1e-59|40.9|181/182|d.14.1.10|1/1|Ribosomal protein S5 domain 2-like| OP:NHOMO 1535 OP:NHOMOORG 925 OP:PATTERN -----------------------111111111121111-----2211211222-2221112111---- 222-1-----------1----1--11-----111111----121----------------1-1-1--111-------------1111111211111111111111111-1111111111111111---------1-43444---32-1-----------------------------------222221112222222322222222222222222222221111------22------------------------------------------------------------------------------------------1224444444442422122444412211322323333334133111111232-111311111222233111111211111111111-13114142111111111111111111111112121121111111111211111111111111111111111112111111111111121122212233232222222132222222222111111251222211432121122112111111111222122335342322333332444233342222225221111111111111111111111111221121211121111111111111111111111-1211111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111112222111111111111111111211111121222222222222222221111111112111111111111211111111111111111211111112222222211111111-111111111111111111111-1112111--- 11--221-1---22222222222222222322222322222222222222222222222222232222121122221-1122222211-23222251112242436-24142222332121222531424Y2-3241221222221221122151231237413251211422221112R2112143662441132221 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- DISOP:02AL 1-2, 57-59, 212-249, 275-288, 307-309, 433-441, 777-794| PSIPRED cccccccccEEEcccEEEcccEEEEEEEccHHHHHHHHHHHHccccEEEEEEcccccccccccccccccEEEEEEEEEEcccccEEEEEEEEEEEEEEEEEEcccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccccHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHcccEEEEEcccccHHHHHcccccccccccHHHHHHHHHHHHHHccEEEEEccHHHcccccccccccccccccHHHHHHHHHHHcccccccccEEEEEEcccHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEccccEEEEEEEEEEcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEccccEEEEEccHHHHHHHHHHccccEEEEcHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHcccccccccccccccccccccHHHccc //