[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : lpxB
DDBJ      :lpxB         lipid-A-disaccharide synthase (lpxB)
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  551/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
c.1.9c.87.1
:378 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   127->356 1ddqC PDBj 6e-04 9.1 %
:RPS:SCOP  130->326 2a3lA1  c.1.9.1 * 9e-05 10.6 %
:HMM:SCOP  2->347 1f6dA_ c.87.1.3 * 6.2e-19 20.2 %
:RPS:PFM   4->347 PF02684 * LpxB 1e-56 32.5 %
:HMM:PFM   4->369 PF02684 * LpxB 2.3e-90 31.7 366/373  
:BLT:SWISS 1->356 LPXB_RICBR 2e-52 34.3 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21732.1 GT:GENE lpxB GT:PRODUCT lipid-A-disaccharide synthase (lpxB) GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 883826..884962 GB:FROM 883826 GB:TO 884962 GB:DIRECTION + GB:GENE lpxB GB:PRODUCT lipid-A-disaccharide synthase (lpxB) GB:PROTEIN_ID AAZ21732.1 GB:DB_XREF GI:71062729 GB:GENE:GENE lpxB LENGTH 378 SQ:AASEQ MKKIFILTGEPSGDKLASTVISKLKMNNPNIEYLSVGGTHIKKLGIKSIFDLKEITYLGFTSVLFNIFKIRKKINKTVEEIIKFNPDILFSVDSPDFTLRVAEKVKNINHNIKIIHYVAPQVWVWRKNRVKKIKKFIDHILLLFNFEKKYFDEENIKNTFVGHPLIEKKDNVITSLDNLISKDKKIISLFPGSRKSETSVLLPILLNFIKLMNKKKLDHLFVFHATDENKEFIINKVKKTNLDNIDIISDEDIKNQVLSNSIFAVSKSGTISLQISSANIPSIIIYKLGFINFMIFKLLVNVRFANIINIINDKEVIPELLQKECNAEEIYKTVTYFLKNPELIEKQLVDCKKTLEGIKSKSSSSSEAALILNNYLVS GT:EXON 1|1-378:0| BL:SWS:NREP 1 BL:SWS:REP 1->356|LPXB_RICBR|2e-52|34.3|350/381| TM:NTM 1 TM:REGION 284->306| SEG 65->76|fnifkirkkink| SEG 106->116|kninhnikiih| SEG 359->366|ksksssss| RP:PDB:NREP 1 RP:PDB:REP 127->356|1ddqC|6e-04|9.1|230/1112| RP:PFM:NREP 1 RP:PFM:REP 4->347|PF02684|1e-56|32.5|342/368|LpxB| HM:PFM:NREP 1 HM:PFM:REP 4->369|PF02684|2.3e-90|31.7|366/373|LpxB| GO:PFM:NREP 2 GO:PFM GO:0008915|"GO:lipid-A-disaccharide synthase activity"|PF02684|IPR003835| GO:PFM GO:0009245|"GO:lipid A biosynthetic process"|PF02684|IPR003835| RP:SCP:NREP 1 RP:SCP:REP 130->326|2a3lA1|9e-05|10.6|188/616|c.1.9.1| HM:SCP:REP 2->347|1f6dA_|6.2e-19|20.2|317/0|c.87.1.3|1/1|UDP-Glycosyltransferase/glycogen phosphorylase| OP:NHOMO 564 OP:NHOMOORG 558 OP:PATTERN -------------------------------------------------------------------- 111--------------------------------------------------------------------------------111111111-1111--111111111-111111111111111111111111111----------1211111111111-11111111111111111111111-----111---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------11111111111111--1111111111111111111111-1111111111111111111111111111111111111111111111111111111------------1111111111111----1-----11111111111111111111111111111111111111111111111111111111111111111---11111111111--1111111111111111111-11111111111111111111111111111111111111111111111111111111111--11111------11111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111122221111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111----------------------------------------------111 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2111--1---1-1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 230 STR:RPRED 60.8 SQ:SECSTR ##############################################################################################################################TTGGGGcTHHHHHHccccccTTcccGGGTTHHHHHcccccccTTccccEEccccccEEccccccTTHHHcccEEcccccEEccccccccccccccccccccccccccTTcccccccccccccccccccccTTTTcccEEEccccTTccccEEEcccccccccEEcccccccHHHHHHHHccccccccccccccccccTTTcTTTTTcccHHHHHHHHHHHccTTcccccc###################### DISOP:02AL 175-179, 353-365| PSIPRED ccEEEEEEccccHHHHHHHHHHHHHHHcccEEEEEEccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHcccccEEEEEccccEEcccHHHHHHHHHHHHHHHHccccHHHHHHccccEEEEccccHHccccHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHcccccccHHHHHcccccHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccc //