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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : lpxD
DDBJ      :lpxD         UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase  RP009
Swiss-Prot:             

Homologs  Archaea  8/68 : Bacteria  596/915 : Eukaryota  20/199 : Viruses  0/175   --->[See Alignment]
b.81.1
:326 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   42->306 3eh0A PDBj 4e-35 36.8 %
:RPS:PDB   134->323 3dk5A PDBj 2e-23 21.1 %
:RPS:SCOP  119->156 1s80A  b.81.1.6 * 3e-04 28.9 %
:RPS:SCOP  129->316 1j2zA  b.81.1.1 * 6e-23 23.2 %
:HMM:SCOP  40->327 2f9cA1 b.81.1.7 * 1.9e-71 39.3 %
:HMM:PFM   126->141 PF00132 * Hexapep 0.00021 50.0 16/18  
:HMM:PFM   143->160 PF00132 * Hexapep 0.00018 44.4 18/18  
:HMM:PFM   155->170 PF00132 * Hexapep 1.2e-05 56.2 16/18  
:HMM:PFM   210->225 PF00132 * Hexapep 5.6e-05 56.2 16/18  
:HMM:PFM   249->265 PF00132 * Hexapep 0.0002 47.1 17/18  
:HMM:PFM   268->282 PF00132 * Hexapep 0.00092 53.3 15/18  
:HMM:PFM   30->100 PF04613 * LpxD 1.7e-16 28.2 71/72  
:BLT:SWISS 40->324 LPXD2_LEGPA 3e-52 38.9 %
:PROS 234->262|PS00101|HEXAPEP_TRANSFERASES
:PROS 276->304|PS00101|HEXAPEP_TRANSFERASES
:REPEAT 4|129->158|161->192|231->264|267->300
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21729.1 GT:GENE lpxD GT:PRODUCT UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase RP009 GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 881283..882263 GB:FROM 881283 GB:TO 882263 GB:DIRECTION + GB:GENE lpxD GB:PRODUCT UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase RP009 GB:PROTEIN_ID AAZ21729.1 GB:DB_XREF GI:71062726 GB:GENE:GENE lpxD LENGTH 326 SQ:AASEQ MINPFFKNNGPLNISDILQLINLDDLNIDNDQEINDIKDLLTSKKNDITFFHSKKYKNFAKNTKASFCLTTEILKDELPKSCLPLIVENVLVSTSKVTSKFYPSSINDNFDYTARDIAETKFKDKVKCGKNVLIGDNVTLGSNCLIGHNSIIEQNVSIGDNCSIGSNVIIRNTLIDNNVTVLDNCVIGKHGFGFFPVSKKNLRYPHIGIVIIGENSEIGCGCTIDRGSMSNTVIGKNSFLDNQIHIAHNVKIGDNSIIAGQVGIAGSSIIGNNVRIGGQAGISGHLTIGNNVEIAGGSGVIKNIKDNSKVMGYPAKNIRDFLKESK GT:EXON 1|1-326:0| BL:SWS:NREP 1 BL:SWS:REP 40->324|LPXD2_LEGPA|3e-52|38.9|285/343| PROS 234->262|PS00101|HEXAPEP_TRANSFERASES|PDOC00094| PROS 276->304|PS00101|HEXAPEP_TRANSFERASES|PDOC00094| NREPEAT 1 REPEAT 4|129->158|161->192|231->264|267->300| SEG 12->37|lnisdilqlinlddlnidndqeindi| BL:PDB:NREP 1 BL:PDB:REP 42->306|3eh0A|4e-35|36.8|253/341| RP:PDB:NREP 1 RP:PDB:REP 134->323|3dk5A|2e-23|21.1|175/442| HM:PFM:NREP 7 HM:PFM:REP 126->141|PF00132|0.00021|50.0|16/18|Hexapep| HM:PFM:REP 143->160|PF00132|0.00018|44.4|18/18|Hexapep| HM:PFM:REP 155->170|PF00132|1.2e-05|56.2|16/18|Hexapep| HM:PFM:REP 210->225|PF00132|5.6e-05|56.2|16/18|Hexapep| HM:PFM:REP 249->265|PF00132|0.0002|47.1|17/18|Hexapep| HM:PFM:REP 268->282|PF00132|0.00092|53.3|15/18|Hexapep| HM:PFM:REP 30->100|PF04613|1.7e-16|28.2|71/72|LpxD| RP:SCP:NREP 2 RP:SCP:REP 119->156|1s80A|3e-04|28.9|38/241|b.81.1.6| RP:SCP:REP 129->316|1j2zA|6e-23|23.2|185/259|b.81.1.1| HM:SCP:REP 40->327|2f9cA1|1.9e-71|39.3|272/0|b.81.1.7|1/1|Trimeric LpxA-like enzymes| OP:NHOMO 1117 OP:NHOMOORG 624 OP:PATTERN -------------------------------11----------2---2-1-11--1------------ 322-----------------------------------11-------------------------------------------223222232-3112--234433321-222222222222222222232112211-------1--2223223224412111222342222212122213132-----322--------------------11------2-----------1------------------------------------------------------------------------------------------12---21112112-11--221----2----1---------2-1---12-221311112222221121113-1211211111111111-2212212111121111121212221112121111111111111111121211111------------2122222222222----11----21112222222122222222222222122222222111121222211121122222223333333--122211131121--3111111112142211111-21221111111212222222223212222222221322323222232222232233323--22111-1-11114121222232222222-2222223322222222222333222222322232222222222334233332231111111111122222222233432222221222222221222222222212222111111111111111111244444434232222222211432111111111143332212333322----------1-------------------------11111111-1121 ----------------------------------------------------------------1---------1------111-1----------------------1------------------------------------------------------1------1---12---------1211-33---222- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 289 STR:RPRED 88.7 SQ:SECSTR #####################################ccTTTccTTEEEEcccccGGGGGGGccccEEEEcTEEEccTTHHHHHHHHTTccEEEEEcccGGGGcccccHHHHHHHHHHHHHHHHHHHTTcEEcEccccEEcTTcEEcccEEEETTcEEccccEEccccEEEEEEEcTTcEEcTTEEccEEEEEEEEcTTTcEEcccETTcEEcccEEEcTTEEETTcEEEETEEEEccEEcTTcEEEEccEEEcEEEccccccccccEEEcccccccTTcEEEcccEEcTTcEEcTTcEEcccccTTcEEccccccccTTHHHHHH DISOP:02AL 320-326| PSIPRED cccccccccccccHHHHHHHHccEEEcccccEEEEEcccHHHcccccEEEEEcHHHHHHHHHccccEEEEcHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHccccccEEcEEEccccEEccccEEcccEEEccccEEcccEEEccccEEccccEEccccEEccccEEEEEEEcccEEEEEEEEEccccHHHcccccccccccccccEEEccccEEcccEEEEccccccEEEccccEEcccEEEEcccEEccccEEccccEEcccEEEcccEEEccccEEEccEEEccccEEEccEEEEcccccccEEEEEccEEEcccccccc //