[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : miaA
DDBJ      :miaA         tRNA isopentenyltransferase
Swiss-Prot:MIAA_PELUB   RecName: Full=tRNA Delta(2)-isopentenylpyrophosphate transferase;         Short=IPP transferase;         EC=2.5.1.8;AltName: Full=Isopentenyl-diphosphate:tRNA isopentenyltransferase;         Short=IPTase;         Short=IPPT;AltName: Full=Dimethylallyl diphosphate:tRNA dimethylallyltransferase;         Short=DMAPP:tRNA dimethylallyltransferase;         Short=DMATase;

Homologs  Archaea  0/68 : Bacteria  863/915 : Eukaryota  140/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:313 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->296 3ephA PDBj 8e-29 31.2 %
:RPS:PDB   6->74 3crmA PDBj 1e-06 29.0 %
:RPS:PDB   241->291 3d3qB PDBj 4e-07 34.0 %
:RPS:SCOP  3->65 1e2hA  c.37.1.1 * 2e-05 12.7 %
:HMM:SCOP  7->151 1cbuA_ c.37.1.11 * 1.3e-27 42.4 %
:RPS:PFM   9->61 PF01745 * IPT 3e-05 32.1 %
:RPS:PFM   40->283 PF01715 * IPPT 2e-33 33.7 %
:HMM:PFM   39->289 PF01715 * IPPT 1.7e-74 38.4 250/253  
:HMM:PFM   8->33 PF02283 * CobU 9e-05 42.3 26/167  
:BLT:SWISS 1->313 MIAA_PELUB e-143 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20829.1 GT:GENE miaA GT:PRODUCT tRNA isopentenyltransferase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(3891..4832) GB:FROM 3891 GB:TO 4832 GB:DIRECTION - GB:GENE miaA GB:PRODUCT tRNA isopentenyltransferase GB:PROTEIN_ID AAZ20829.1 GB:DB_XREF GI:71061826 GB:GENE:GENE miaA LENGTH 313 SQ:AASEQ MDKQSKIILISGPTASGKSNFAVKIAKKIEGEIINADSMQVYKKLKILTARPNKQEQKNIKHHLYGFVDLNEKFSTGQWLELTIKKIENIQKKKKIPILVGGTGLYFQSLINGLVKIPEIPLKFRNKVRLMSKKEGQKKFYKKLLKLDPKIKDKFDPNDTQRSIRAYEIKSYTNISMYDWLAKTKSEFNDSDFLKLHIDTKREKLVEKINLRTSSMLNNGAISEVKKFLKLKIKKDQSVNKVIGIAELTQYLNDEITLDEAEELISIKTRQYAKRQATWARTRMTSWIKVDPIKLDGYIKKLKKSSLKLDQLT GT:EXON 1|1-313:0| SW:ID MIAA_PELUB SW:DE RecName: Full=tRNA Delta(2)-isopentenylpyrophosphate transferase; Short=IPP transferase; EC=2.5.1.8;AltName: Full=Isopentenyl-diphosphate:tRNA isopentenyltransferase; Short=IPTase; Short=IPPT;AltName: Full=Dimethylallyl diphosphate:tRNA dimethylallyltransferase; Short=DMAPP:tRNA dimethylallyltransferase; Short=DMATase; SW:GN Name=miaA; OrderedLocusNames=SAR11_0004; SW:KW ATP-binding; Complete proteome; Magnesium; Nucleotide-binding;Nucleotidyltransferase; Transferase; tRNA processing. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->313|MIAA_PELUB|e-143|100.0|313/313| GO:SWS:NREP 5 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0016779|"GO:nucleotidyltransferase activity"|Nucleotidyltransferase| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| GO:SWS GO:0008033|"GO:tRNA processing"|tRNA processing| SEG 84->98|ikkieniqkkkkipi| SEG 142->156|kkllkldpkikdkfd| SEG 226->235|kkflklkikk| SEG 300->309|kklkksslkl| BL:PDB:NREP 1 BL:PDB:REP 6->296|3ephA|8e-29|31.2|282/402| RP:PDB:NREP 2 RP:PDB:REP 6->74|3crmA|1e-06|29.0|69/236| RP:PDB:REP 241->291|3d3qB|4e-07|34.0|50/290| RP:PFM:NREP 2 RP:PFM:REP 9->61|PF01745|3e-05|32.1|53/229|IPT| RP:PFM:REP 40->283|PF01715|2e-33|33.7|243/251|IPPT| HM:PFM:NREP 2 HM:PFM:REP 39->289|PF01715|1.7e-74|38.4|250/253|IPPT| HM:PFM:REP 8->33|PF02283|9e-05|42.3|26/167|CobU| GO:PFM:NREP 5 GO:PFM GO:0004161|"GO:dimethylallyltranstransferase activity"|PF01745|IPR002648| GO:PFM GO:0009058|"GO:biosynthetic process"|PF01745|IPR002648| GO:PFM GO:0004811|"GO:tRNA isopentenyltransferase activity"|PF01715|IPR002627| GO:PFM GO:0005524|"GO:ATP binding"|PF01715|IPR002627| GO:PFM GO:0008033|"GO:tRNA processing"|PF01715|IPR002627| RP:SCP:NREP 1 RP:SCP:REP 3->65|1e2hA|2e-05|12.7|63/306|c.37.1.1| HM:SCP:REP 7->151|1cbuA_|1.3e-27|42.4|125/0|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1076 OP:NHOMOORG 1003 OP:PATTERN -------------------------------------------------------------------- 111-1111111111111----11121-----21111111111111-1-111-111111--1111111111111111111111-11111222222111--111111112121111111111111111111111111-11111111111111111111111111111111111111111111111--11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111-1111111111111111111111111111-11111111111-11111111111111111111111111111111111-1111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111222211222111111211111111111111111111111111111111111111111111111111111111211-11111-1111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112-11111-------1------1------11111111111-1 11-1211----1-1112---1-11111111-11111-1-1111---111--2-1111-1111--11111111-111111111111111--1-211------1-1---1-1--1121---1111111-2-381-212-1-111111-1111111111--21111211-11--111-1--29111-16428-711-11111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 294 STR:RPRED 93.9 SQ:SECSTR ##cEEEEEEEEccTTccHHHHHHHHHHHccEEEEEEcTTTTcTTccTTTTcccHHHHHHccEETcccTTccccHcHHHHHHHHHHHHHHHHTTTcEEEEEcccGGGGGGGGTcccccccccccccHHHHHHHTccccccHHHHHHHccHHHHTTccTTcHHHHHHHHHHHHHHcccHHHHcccHHHHHHTcEEEEEEEEccHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTcGTTTccGGcTTTTTHHHHHHTcccHHHHHHHHHHHHHHHHHHHHHHHHHTccEEEETTEEEEE################# DISOP:02AL 1-3| PSIPRED ccccccEEEEEccccccHHHHHHHHHHHccccEEEccHHHHHcccccccccccHHHHHcccEEEEEcccccccccHHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHcccccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccc //