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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : mmsA
DDBJ      :mmsA         Methylmalonate-semialdehyde dehydrogenase [acylating]  (MMSDH)
Swiss-Prot:             

Homologs  Archaea  56/68 : Bacteria  797/915 : Eukaryota  190/199 : Viruses  0/175   --->[See Alignment]
c.82.1
:497 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->483 1t90A PDBj e-129 46.0 %
:RPS:PDB   6->482 3ek1B PDBj e-119 30.1 %
:RPS:SCOP  6->482 1a4sA  c.82.1.1 * e-112 32.6 %
:HMM:SCOP  1->481 1uzbA_ c.82.1.1 * 2.1e-151 39.1 %
:RPS:PFM   28->458 PF00171 * Aldedh 6e-77 40.1 %
:HMM:PFM   17->477 PF00171 * Aldedh 1.2e-146 41.1 457/462  
:BLT:SWISS 4->481 IOLA1_GEOTN e-143 50.6 %
:PROS 274->285|PS00070|ALDEHYDE_DEHYDR_CYS

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21062.1 GT:GENE mmsA GT:PRODUCT Methylmalonate-semialdehyde dehydrogenase [acylating] (MMSDH) GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(242868..244361) GB:FROM 242868 GB:TO 244361 GB:DIRECTION - GB:GENE mmsA GB:PRODUCT Methylmalonate-semialdehyde dehydrogenase [acylating] (MMSDH) GB:PROTEIN_ID AAZ21062.1 GB:DB_XREF GI:71062059 GB:GENE:GENE mmsA LENGTH 497 SQ:AASEQ MNLLEHFVGGKLISGSSDRKSKVFNPATGEQESEVRLASKTDLDKAVEVAQKAFETWSLKPSLQRARVMFKFKELIEKNADELTKLIVSEHGKVYEDAKGSLTRGLEVVEFACGIPHLLKGEFSENVGTNVDSWSMRQPLGVVAGITPFNFPAMVPMWMFPIAIACGNTFILKPSEKDPSCPLRLAELLTEAGLPDGVFNVVNGDKEAVDAILTNKDVKAVSFVGSTPIAKYIYENSAKNEKRVQALGGAKNHLVVMPDCDLDGAVNGLMGAAYGSAGERCMAQSVAVAVGDIGDELVARLSKKAEALKVGPGMDKTSEMGPLVTKEHLEKVKSYVDLGVEEGAKLVVDGRNIKLQGYENGFFIGGCLFDHVKKDMRIYKEEIFGPVLSVIRVKTFEEATKLINDHEYGNGVSIYTRDGDAGRTFASKIQVGMVGINVPIPVPMAFHSFGGWKRSLFGDSAMHGAEGIKFYTKLKTVTSRWPSGIRSNAEFVMPTMK GT:EXON 1|1-497:0| BL:SWS:NREP 1 BL:SWS:REP 4->481|IOLA1_GEOTN|e-143|50.6|476/484| PROS 274->285|PS00070|ALDEHYDE_DEHYDR_CYS|PDOC00068| BL:PDB:NREP 1 BL:PDB:REP 4->483|1t90A|e-129|46.0|476/484| RP:PDB:NREP 1 RP:PDB:REP 6->482|3ek1B|e-119|30.1|468/483| RP:PFM:NREP 1 RP:PFM:REP 28->458|PF00171|6e-77|40.1|424/440|Aldedh| HM:PFM:NREP 1 HM:PFM:REP 17->477|PF00171|1.2e-146|41.1|457/462|Aldedh| GO:PFM:NREP 3 GO:PFM GO:0008152|"GO:metabolic process"|PF00171|IPR015590| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00171|IPR015590| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00171|IPR015590| RP:SCP:NREP 1 RP:SCP:REP 6->482|1a4sA|e-112|32.6|473/503|c.82.1.1| HM:SCP:REP 1->481|1uzbA_|2.1e-151|39.1|473/516|c.82.1.1|1/1|ALDH-like| OP:NHOMO 9933 OP:NHOMOORG 1043 OP:PATTERN 221-1-4754454653-312111-A4432-521-11111111211222124431-1--1-13351--1 6994L947AAD547JPK9A-9N22Jb99999FRQWSMU**8M6U67781744UINDA9--CDN3CFOLJKA----111-122H11111--12-211---62637484666--------------12212221221266686---6455533441311111312232455541111-111111176745-1-C89999998AAAA99887EDBB6B9AB9HFDF86333332D54555555555555558667711112311111121122-11122---2222111-221111111111122212222222222--111---2-11172223223422-211-2224313131---2211---1--21--1117-5IEEA11111B6GBK54699796FGHIFDHCHGH-46D53J6ANOB-NJJMLLVRNYQQE99C5BHPCAAC8JJEDEEEEEEADC6456811111111----1111-1111-11-11118AOeB2BOKDDdYbaYbRKKKGZYcePPNMBNuUtMZTK14GCFC9CB9HDMBKQ332-112A62444444132AC6644-3331332223-3333435443333AA15211322211211111111112-11143981894K7DB99AAAA9AB888987AA9AD-1-5421------B966587AAA8A878AB-AB9B988B7AA8ABB9BB9HIH99894BA9AA9AAAB88B8A8I773667621466687657888--1633122888717DKW222112-----2223JILFH7G7C9H1KKJKKONUGRRMNCKHJ3221132222433A566668B88B8998987555------1-441111--------2-2----1---1-12-111-12--111111112-2-2-331 ----CBA-A54-8B8IILKPNQKRTRREECCCCEEDEFEEEEEBDDDDKUTd*mNMFCDDDCD9B6AA4A88D9A894998BA9AD57-IVEICGEECD9A9GFCF-9JBXOhIMOOCBCAFKEPQAVDt*Q-SPUCFC9QEGPEAEEFCI88aDFDGOKbWCOFCASBCGAKNC5754*66569LCXXKIS78SFSKB ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 497 STR:RPRED 100.0 SQ:SECSTR ccTHHEEETTEEEccTTccEEEEEcTTTccEEEEEEcccHHHHHHHHHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHTTcccEEEccccTTEEEEEEEEEccEEEEEcccccTTHHHHHHHHHHHHHTcEEEEEccTTcHHHHHHHHHHHHHTTccTTTEEEccccHHHHHHHHHcTTEEEEEEEccHHHHHHHHHHHGGGTcEEEEEccccEEEEEcTTccHHHHHHHHHHHHHGGGGccTTcEEEEEEEHHHHHHHHHHHHHHHHTcccccTTcTTccccccccHHHHHHHHHHHHHHHHTTcEEEEcccccccccEEETTEEccEEEEEEcTTcGGGTccccccEEEEEEEccHHHHHHHHHccccccEEEEEcccHHHHHHHHHHccccEEEEccccccccccccccccGGGEEccccccHHHHGGGGEEEEEEEEEcccccccTcTTccccHH DISOP:02AL 497-498| PSIPRED ccEEEEEEccEEEccccccEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEccccccEEEEEEEccccEEEEEccccHHHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHccccccEEEEEccHHHHHHHHHHHHccccEEEEEccccccEEEcccccHHHHHHHHHHHHHHHcccEEEcccEEEEEccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEcccccccccccccEEEccEEccccccccEEEEEcccccEEEEEEEccHHHHHHHHccccccEEEEEEcccHHHHHHHHHHccccEEEEccccccccccccccccccccccccccccHHHHHHHHHEEEEEEEEcccccccccccccccc //