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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : mmsB
DDBJ      :mmsB         3-hydroxyisobutyrate dehydrogenase
Swiss-Prot:             

Homologs  Archaea  28/68 : Bacteria  583/915 : Eukaryota  174/199 : Viruses  0/175   --->[See Alignment]
a.100.1c.2.1
:288 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->286 2gf2D PDBj 3e-37 31.9 %
:RPS:PDB   4->288 3ckyC PDBj 8e-80 31.3 %
:RPS:SCOP  4->163 1vpdA2  c.2.1.6 * 7e-43 36.7 %
:RPS:SCOP  165->288 3cumA1  a.100.1.1 * 2e-30 24.2 %
:HMM:SCOP  2->164 1pgpA2 c.2.1.6 * 3.6e-49 44.0 %
:HMM:SCOP  165->288 2cvzA1 a.100.1.1 * 1.6e-37 38.7 %
:RPS:PFM   1->153 PF03446 * NAD_binding_2 2e-27 43.6 %
:HMM:PFM   1->163 PF03446 * NAD_binding_2 4.2e-53 37.0 162/163  
:HMM:PFM   213->260 PF04170 * NlpE 0.0002 14.6 48/87  
:BLT:SWISS 1->288 Y1503_SHEFN e-109 65.6 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22003.1 GT:GENE mmsB GT:PRODUCT 3-hydroxyisobutyrate dehydrogenase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 1147089..1147955 GB:FROM 1147089 GB:TO 1147955 GB:DIRECTION + GB:GENE mmsB GB:PRODUCT 3-hydroxyisobutyrate dehydrogenase GB:PROTEIN_ID AAZ22003.1 GB:DB_XREF GI:71063000 GB:GENE:GENE mmsB LENGTH 288 SQ:AASEQ MSNVAFIGLGVMGYPMAGYISKAGHNVTVYNRTAAKADKWVAEYKGSKADTPAKAAEDADFVFTCVGNDNDLREVTFGDNGIFKTIKKGSVYIDNTTASATIAREIYEHSLKSEFGFLDAPVSGGQAGAENGALTVMIGGDQANFDKAKDIIDCYSKKMKLLGGAGNGQLAKMVNQICIAGLVQGLSEAINFGKKAGLNMEDVIEVISKGAAQSWQMENRYKTMIDDQFEFGFAVDWMRKDLKIAMDEAKNNGSQLPVTEIVDKYYGEVQEMGGNRWDTSSLIRRLSK GT:EXON 1|1-288:0| BL:SWS:NREP 1 BL:SWS:REP 1->288|Y1503_SHEFN|e-109|65.6|288/291| BL:PDB:NREP 1 BL:PDB:REP 4->286|2gf2D|3e-37|31.9|282/294| RP:PDB:NREP 1 RP:PDB:REP 4->288|3ckyC|8e-80|31.3|284/296| RP:PFM:NREP 1 RP:PFM:REP 1->153|PF03446|2e-27|43.6|149/160|NAD_binding_2| HM:PFM:NREP 2 HM:PFM:REP 1->163|PF03446|4.2e-53|37.0|162/163|NAD_binding_2| HM:PFM:REP 213->260|PF04170|0.0002|14.6|48/87|NlpE| GO:PFM:NREP 3 GO:PFM GO:0004616|"GO:phosphogluconate dehydrogenase (decarboxylating) activity"|PF03446|IPR006115| GO:PFM GO:0006098|"GO:pentose-phosphate shunt"|PF03446|IPR006115| GO:PFM GO:0055114|"GO:oxidation reduction"|PF03446|IPR006115| RP:SCP:NREP 2 RP:SCP:REP 4->163|1vpdA2|7e-43|36.7|158/161|c.2.1.6| RP:SCP:REP 165->288|3cumA1|2e-30|24.2|124/134|a.100.1.1| HM:SCP:REP 2->164|1pgpA2|3.6e-49|44.0|159/0|c.2.1.6|1/1|NAD(P)-binding Rossmann-fold domains| HM:SCP:REP 165->288|2cvzA1|1.6e-37|38.7|124/0|a.100.1.1|1/1|6-phosphogluconate dehydrogenase C-terminal domain-like| OP:NHOMO 2125 OP:NHOMOORG 785 OP:PATTERN ----1-11222222211411111----1-1-------------1------1----1-----111--11 134-12111111--55311-14--291111115666236624281121-1--546322--1-1-3-622212111---1---3111-------------------2-2--------------------1------142222---13221-222----22323221-11111-211---2-11-12112---2122232422323332233133223322222223222222212-------------------1-2-33-211111--331211111-1------------------------------------1---111--1-11-------1-1-1---11------111--33-----1--111----3122222-----429A72233633211231333224-22811A2A452-5554546866787722243422226571111111181122111-----------------------------32242-3863A8998886222177AD555625A5H9A86-4553343335286772321--1331111111111222-12--32-111--2-2-21222-111111--11-------------111-11-----1121223-222322222223222222222222---1112------2222-114334454544-34444444243433444414443312-4244434444434344132122331-122222222222----1111-1111133531113-2-12-1111133333241123-66663543433343323-111--1-1-311211111332221132222222------2---1111--------1-1------------------1------------1---2-1 ----111-422-2229554454566342223232333333433222232224A711333222111----2-11-11-1---11-11---2225221213-111222-29345435331212122322416I2-33522212-222121222124132232234322132C121211333H232-395AC4C43374435 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 288 STR:RPRED 100.0 SQ:SECSTR ccEEEEEcccTTHHHHHHHHHHTTcEEEEEcccHHHHHHHHTTTTcEEcccHHHHHHHccEEEEccccHHHHHHHHTcTTcHHHHccTTcEEEEcccccHHHHHHHHHHHHHTTcEEEEccEEcHHHHHHHTcEEEEEEccHHHHHHHHHHHHHHEEEEEEEEcTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccHHHHHHHHHTcTTccHHHHHHcccccTccccccccHHHHHHHHHHHHHHHHHHTcccHHHHHHHHHHHHHHHTTcTTccGGGGHHHHHH DISOP:02AL 288-289| PSIPRED ccEEEEEcccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHccccccccHHHHHccccEEEEEcccHHHHHHHHHcHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHccccEEEcccccccHHHccccEEEEEcccHHHHHHHHHHHHHHHccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHcc //