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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : nrdA
DDBJ      :nrdA         ribonucleoside-diphosphate reductase alpha chain
Swiss-Prot:             

Homologs  Archaea  42/68 : Bacteria  787/915 : Eukaryota  192/199 : Viruses  17/175   --->[See Alignment]
a.98.1c.7.1
:645 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   40->615 1zyzB PDBj 7e-58 34.2 %
:RPS:PDB   1->605 2cvtA PDBj e-123 29.6 %
:RPS:SCOP  60->642 1l1lA  c.7.1.4 * e-104 14.4 %
:HMM:SCOP  51->123 1rlrA1 a.98.1.1 * 4.2e-13 42.5 %
:HMM:SCOP  125->607 1peqA2 c.7.1.2 * 3.6e-133 44.4 %
:RPS:PFM   67->120 PF00317 * Ribonuc_red_lgN 9e-09 55.6 %
:RPS:PFM   127->601 PF02867 * Ribonuc_red_lgC 3e-60 36.8 %
:HMM:PFM   127->449 PF02867 * Ribonuc_red_lgC 7e-85 40.9 313/533  
:HMM:PFM   455->602 PF02867 * Ribonuc_red_lgC 2.4e-39 37.0 146/533  
:HMM:PFM   58->123 PF00317 * Ribonuc_red_lgN 7.9e-16 42.4 66/83  
:BLT:SWISS 48->619 RIR1_IIV3 e-108 43.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21962.1 GT:GENE nrdA GT:PRODUCT ribonucleoside-diphosphate reductase alpha chain GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1113630..1115567) GB:FROM 1113630 GB:TO 1115567 GB:DIRECTION - GB:GENE nrdA GB:PRODUCT ribonucleoside-diphosphate reductase alpha chain GB:PROTEIN_ID AAZ21962.1 GB:DB_XREF GI:71062959 GB:GENE:GENE nrdA LENGTH 645 SQ:AASEQ MNKILSQALKKAVSEYSPNNSELSKSKGPDLFSLSNDTELFQNEKGIIIKIDRTRDSKLTDFGKATLKDRYLGQNESFQDLFARVASSYADDNLHAQRIYNYISNLWFMPATPVLSNGGTKRGLPISCFLNEASDSLNGILDLWSENVWLAAKGGGIGSYWGNLRSIGEKIGKVGKTSGIIPFIKVMDSLTMAISQGSLRRGSAACYLPIEHPEIEEFIEMRRPTGGDPNRKALNLHHGVLVSDAFMRAVETDEQWALKSPADGTVQQTISARNLWIRLLTARIETGEPYIIYIDTVNRQIPQHHKLANLTVKTSNLCSEITLPTGIDKNGRDRTAVCCLSSLNLEKYDEWKDDNVMINDVMRFLDNVLTDFIERAPEQFDDAKYSAEKERSVGLGVMGFHSYLQKHSIPLESVMSKAWNKKIFKHIQEHVDQASKDLADERGACPDAADYGYNERFSNKTAIAPTASISIICGGASPGVEPVAANSYTHKTLSGSFNVRNRYLVELLEKHGKNTDDVWSGITTNQGSVSHLDFLTDLEKDVFKTAFELDQKWIIELSGDRTPYISQAQSINLFVPADIHKRELHKIHFDAWKKGLKSLYYCRSKSIQRAENVNDTKATDVNANVYKSKPQTTEQPEYEECLSCQ GT:EXON 1|1-645:0| BL:SWS:NREP 1 BL:SWS:REP 48->619|RIR1_IIV3|e-108|43.6|557/630| SEG 209->220|piehpeieefie| SEG 461->472|taiaptasisii| BL:PDB:NREP 1 BL:PDB:REP 40->615|1zyzB|7e-58|34.2|565/769| RP:PDB:NREP 1 RP:PDB:REP 1->605|2cvtA|e-123|29.6|592/637| RP:PFM:NREP 2 RP:PFM:REP 67->120|PF00317|9e-09|55.6|54/80|Ribonuc_red_lgN| RP:PFM:REP 127->601|PF02867|3e-60|36.8|446/506|Ribonuc_red_lgC| HM:PFM:NREP 3 HM:PFM:REP 127->449|PF02867|7e-85|40.9|313/533|Ribonuc_red_lgC| HM:PFM:REP 455->602|PF02867|2.4e-39|37.0|146/533|Ribonuc_red_lgC| HM:PFM:REP 58->123|PF00317|7.9e-16|42.4|66/83|Ribonuc_red_lgN| GO:PFM:NREP 7 GO:PFM GO:0004748|"GO:ribonucleoside-diphosphate reductase activity"|PF00317|IPR013509| GO:PFM GO:0005524|"GO:ATP binding"|PF00317|IPR013509| GO:PFM GO:0006260|"GO:DNA replication"|PF00317|IPR013509| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00317|IPR013509| GO:PFM GO:0004748|"GO:ribonucleoside-diphosphate reductase activity"|PF02867|IPR000788| GO:PFM GO:0005971|"GO:ribonucleoside-diphosphate reductase complex"|PF02867|IPR000788| GO:PFM GO:0006260|"GO:DNA replication"|PF02867|IPR000788| RP:SCP:NREP 1 RP:SCP:REP 60->642|1l1lA|e-104|14.4|548/717|c.7.1.4| HM:SCP:REP 51->123|1rlrA1|4.2e-13|42.5|73/0|a.98.1.1|1/1|R1 subunit of ribonucleotide reductase, N-terminal domain| HM:SCP:REP 125->607|1peqA2|3.6e-133|44.4|441/525|c.7.1.2|1/1|PFL-like glycyl radical enzymes| OP:NHOMO 1364 OP:NHOMOORG 1038 OP:PATTERN ------1111111111-1111111-111-111--1--------1111-1-111---11-111111-11 11--121111111111122-211112222221222211111---111111111211111111-11121111-111111--1-11122111-11---1--11211121221111111111111111----11----1111--32313211-111----------11-------------------211111-111112221111112111111112211111211111111112111111111111111111111-1-11-2-1-11111111111111122221221111111111111122222222222221111111111---1111-111111111--11111-1112---111--1-1111111-1-123-211211111-11--111-1---22222222222---------213122212212221111121122111121111111111211111321111111111111111111111111111111111111111111111111111122222212122222211322212222243121112212221111111111111211-111111-1111111131211111112211111111111111111111111111111111111111111111111111111111111-1111111-11122121222222222222-22222222222222222222222222222222222221322222222222211222322233222111111111111121121222121-111-111111111111111122121111111112111111111111111111111111211221111111111111111---------1--1-111---11---11-11111-11111---1-111111111-- 1111111-311-1111111111111111121111111111111111111111111111111122222212122222212222222211-111111111111114231121223222111111111-111291-112111111111111-11112112111643111-111111231111H1111141241112241115 ---1-1-1--------1--1---11----------1-1-1--------------------------------------------------------------------------1-----------1-------------------------------------1-----1111- STR:NPRED 615 STR:RPRED 95.3 SQ:SECSTR HHTccccccccHHHHHHHHHHcccTTTccccccccHHHHHHHHTTHHHHHccGGGGGcccHHHHHHHHHHTccccccHHHHHHHHHHHHccccHHHHHHHHHHHTTcEEEcHHHHHHTTcccccccccEEEcccccHHHHHHHHHHHHHTTTccccEEEEcTTcccTTccccccccccccHHHHHHHHHHHHHTTTTTTccccEEEEEcTTcTTHHHHHHTTcccccTTccccTTEEEEEEEcHHHHHHHHTTcEEccccTTTcTccccEEHHHHHHHHHHHHHHHcccEEEEHHHHHHTcTTTTGccTcccccccccTTccccccTTcEcTTccEEccEEEEETTTTEEccccEEcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccEEEEEcHHHHHHHTTccTTcTTHHHHHHHHHHHHHHHHHHHHHHHHHHHcccTTTcTGGGTccHHHHTTccccccccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHccccTTcccHHHHccccccccTTccHHHHHHcccTTTccHHHHHHHHHHHGGGcccccccccccccccTTHHHHHHHHHHHHTTccccccccccccHHHccccc############################## DISOP:02AL 1-2, 621-632| PSIPRED cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccEEEccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEEEcccHHHHHHHHHHHcccccHHHHHcccccEEEccHHHHHHHHccccEEEEccccccEEEEEcHHHHHHHHHHHHHHHccccEEEHHHHHHHccccccccccEEEEccccccccccccccccccccEEEccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccEEEcHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccHHcccccccHHHHHHHcccccccccHHHHHHHHHHHcccEEcccHHHHHHHHHcccccHHHHHHHHHccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHcccHHHHccHHccccccccccccccccccccc //