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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : nrdB
DDBJ      :nrdB         ribonucleoside-diphosphate reductase beta chain
Swiss-Prot:             

Homologs  Archaea  6/68 : Bacteria  601/915 : Eukaryota  104/199 : Viruses  9/175   --->[See Alignment]
a.25.1
:337 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   30->303 2aniA PDBj 6e-33 30.3 %
:RPS:PDB   6->303 2aniA PDBj 8e-51 27.7 %
:RPS:SCOP  28->303 1syyA  a.25.1.2 * 9e-68 29.7 %
:HMM:SCOP  28->338 1oquC_ a.25.1.2 * 6.3e-90 33.0 %
:RPS:PFM   27->302 PF00268 * Ribonuc_red_sm 7e-40 35.6 %
:HMM:PFM   33->297 PF00268 * Ribonuc_red_sm 3.9e-38 23.9 255/281  
:BLT:SWISS 21->332 RIR2_IIV3 2e-79 47.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21961.1 GT:GENE nrdB GT:PRODUCT ribonucleoside-diphosphate reductase beta chain GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1112611..1113624) GB:FROM 1112611 GB:TO 1113624 GB:DIRECTION - GB:GENE nrdB GB:PRODUCT ribonucleoside-diphosphate reductase beta chain GB:PROTEIN_ID AAZ21961.1 GB:DB_XREF GI:71062958 GB:GENE:GENE nrdB LENGTH 337 SQ:AASEQ MNTKIIQPPKEEIVKPQKMGLLVENPVYKPFRYPWCYDAWLTQQRIHWLPEEVPLGDDVRDWQKNLTQSEKNLLTQIFRFFTQADVEVQNCYLRHYTTVFKPTEVLMMMTAFASMETVHIAAYSHLLDTIGMPESEYSAFMKYKEMKDKYDYMQNFDMSSKKDIALTVAVFSAFTEGLQLFASFAILLNFPRHNKMKGMGQIVTWSVRDETLHCNSMIRLFKEFIHENPEIWTPELKAELYKACRTIIEHEDAFIDLAFEMGPMQGLTAQDVKLYIRFIANRRLSQLGLEPIYDVDKNPLTWLDSMLNAVEHMNFFEGRSTEYSKAATQGTWTEAFS GT:EXON 1|1-337:0| BL:SWS:NREP 1 BL:SWS:REP 21->332|RIR2_IIV3|2e-79|47.3|311/376| SEG 141->153|mkykemkdkydym| BL:PDB:NREP 1 BL:PDB:REP 30->303|2aniA|6e-33|30.3|271/317| RP:PDB:NREP 1 RP:PDB:REP 6->303|2aniA|8e-51|27.7|292/317| RP:PFM:NREP 1 RP:PFM:REP 27->302|PF00268|7e-40|35.6|267/277|Ribonuc_red_sm| HM:PFM:NREP 1 HM:PFM:REP 33->297|PF00268|3.9e-38|23.9|255/281|Ribonuc_red_sm| GO:PFM:NREP 3 GO:PFM GO:0004748|"GO:ribonucleoside-diphosphate reductase activity"|PF00268|IPR000358| GO:PFM GO:0009186|"GO:deoxyribonucleoside diphosphate metabolic process"|PF00268|IPR000358| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00268|IPR000358| RP:SCP:NREP 1 RP:SCP:REP 28->303|1syyA|9e-68|29.7|273/317|a.25.1.2| HM:SCP:REP 28->338|1oquC_|6.3e-90|33.0|303/0|a.25.1.2|1/1|Ferritin-like| OP:NHOMO 879 OP:NHOMOORG 720 OP:PATTERN -------------------------111-111------------------------------------ 1---121111111111121-211112222221111111111---111111111211111111-11111111----111--1--1111111-1----1--112-1111-11111111111111111-------------------11111-111----------11-------------------1-11---111---------------111112---111-11111111111----------------11----1-11-1---1111111-1111---11111111--111111111111111111111111111111111----111111111111-1--11111--111-------------------111--111111111--1--111-1--111111111111---------1-14111111-111----111--1-----1-1111111111111-1111111111111111111111111111111111111111111111112111111111111111111111112111111111111111-111111-------111---1-------------1-------------11--111111111111111111111111211111112111-1-111111-111111-1111--111-1-1----22-1-222222222222-222222222222222222222212222222122222223221212222222-111121112211111-111111111111121111121-111-11111111111---11111111121111111111111111111111--------1--2211111111111111----------------11------------------------------------1-- --11-11---4---1---------------------------------11111111111111---111111----1111-1111------3--21--11-11-11111---131612---11--12-2--------1---1-13111---1-11111-1113-1-11-117113-2211V222-12113-112311-12 -----1-------------1---11----------1-1----------------------------------------------------------------------------------------1--------------------------------------------1-1- STR:NPRED 324 STR:RPRED 96.1 SQ:SECSTR #ccccccGGGcccccccHHHccccTTcccccccHHHHHHHHHHHHTcccGGGcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccHHHHTHHHHcHHHHHHHHHHHHHHTGHHHHHHHHHHHHHTTcccccTHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcGGGccHHHHHHHHHHHHHHHHHHHHHHHHHcccccTTTccHHHHHHHHHHHHHHHHHHTTcccccccTccccTTcHTHHHHTcccccccTTTTcTTc############ DISOP:02AL 6-8, 10-20| PSIPRED cccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccccccccccccccEEEccccccccccc //