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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : nth
DDBJ      :nth          probable endonuclease III
Swiss-Prot:             

Homologs  Archaea  66/68 : Bacteria  869/915 : Eukaryota  159/199 : Viruses  0/175   --->[See Alignment]
a.96.1
:217 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->209 1p59A PDBj 2e-45 41.7 %
:RPS:PDB   1->212 2abkA PDBj 5e-43 39.3 %
:RPS:SCOP  1->213 1ornA  a.96.1.1 * 3e-56 41.3 %
:HMM:SCOP  1->213 1xqoA_ a.96.1.6 * 2.5e-60 39.4 %
:RPS:PFM   35->150 PF00730 * HhH-GPD 8e-15 36.2 %
:HMM:PFM   36->167 PF00730 * HhH-GPD 1.9e-18 30.3 99/121  
:BLT:SWISS 14->213 END3_BACSU 1e-46 44.0 %
:PROS 103->132|PS01155|ENDONUCLEASE_III_2

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21187.1 GT:GENE nth GT:PRODUCT probable endonuclease III GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(356265..356918) GB:FROM 356265 GB:TO 356918 GB:DIRECTION - GB:GENE nth GB:PRODUCT probable endonuclease III GB:PROTEIN_ID AAZ21187.1 GB:DB_XREF GI:71062184 GB:GENE:GENE nth LENGTH 217 SQ:AASEQ MDEKDKAKTILKILNKLYPTTPIPLDHINNFTLLMSVLLSAQCTDLNVNNVTKNIYPKYNKPEHFVKLGKKRIEKLIKSIGLFRVKAKSIYLMSKQLLEKHGGKVPKSFEELEKLPGVGHKTASVVMSQGFGVPAFAVDTHIHRLAQRWGLTNGKNVIQTEKDLKRIFPEKTWSKLHLQIIYYGREFCKARECYGLTCKICTTCYPNRKNPVKIKKA GT:EXON 1|1-217:0| BL:SWS:NREP 1 BL:SWS:REP 14->213|END3_BACSU|1e-46|44.0|200/219| PROS 103->132|PS01155|ENDONUCLEASE_III_2|PDOC00615| BL:PDB:NREP 1 BL:PDB:REP 4->209|1p59A|2e-45|41.7|206/214| RP:PDB:NREP 1 RP:PDB:REP 1->212|2abkA|5e-43|39.3|211/211| RP:PFM:NREP 1 RP:PFM:REP 35->150|PF00730|8e-15|36.2|116/144|HhH-GPD| HM:PFM:NREP 1 HM:PFM:REP 36->167|PF00730|1.9e-18|30.3|99/121|HhH-GPD| GO:PFM:NREP 1 GO:PFM GO:0006284|"GO:base-excision repair"|PF00730|IPR003265| RP:SCP:NREP 1 RP:SCP:REP 1->213|1ornA|3e-56|41.3|213/214|a.96.1.1| HM:SCP:REP 1->213|1xqoA_|2.5e-60|39.4|208/0|a.96.1.6|1/1|DNA-glycosylase| OP:NHOMO 1186 OP:NHOMOORG 1094 OP:PATTERN 2211111-1111111-1121111131122121112111111111111112223111111111111111 1111112111111111111-11111111111111111111111111111---111111--1111111111111111111111122222111111111--1121111111111111111111111111111111121211111111-111111122111111111112111111111111111111211111111111111111111111111111111111111111111111111111111111111111111111111-11111111111----1111111111111111111111111111111111111111111111111211111111111111111111211111111-11111111111111211111111111111111111111111111111111111-2212211211111111111111111111111111111111111111111111111111111111111111111111111111111211111111111111111111111111111111111111111111111111111111121111111111111111111211111111111111111112111123311111111111111111111111112111111111111111211111111111111111--1111111-11111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111122111111111111111-------------------------1111111111111 11-1121-3111111111-1111111-1111111111--1-1111111111111-11-111111111--12111122-2211111111-1-11111111111111111312-11112--11-111111-171--1-----11111-1---1--1111-1--112111111-1111212292121-2--1-211132222 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 216 STR:RPRED 99.5 SQ:SECSTR ccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHTTTccHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHTTcTTHHHHHHHHHHHHHHHHHHTTTcccccHHHHHHcTTccHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHHccGGGTTTHHHHHHHHHHHTcccccccGGGcTTGGGcccTTcccccccc# DISOP:02AL 1-4, 212-217| PSIPRED ccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccccc //