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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : ntrX
DDBJ      :ntrX         nitrogen assimilation regulatory protein ntrX
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  624/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
a.102.3a.4.1c.23.1c.37.1
:451 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   24->367 3dzdA PDBj 7e-65 42.0 %
:RPS:PDB   27->386 1e32A PDBj 3e-48 12.6 %
:RPS:PDB   401->448 3e7lD PDBj 8e-10 39.6 %
:RPS:SCOP  24->118 1a0oA  c.23.1.1 * 2e-13 32.3 %
:RPS:SCOP  89->447 1hn0A1  a.102.3.2 * 6e-42 9.4 %
:HMM:SCOP  2->187 1s8nA_ c.23.1.1 * 5.2e-36 34.9 %
:HMM:SCOP  141->380 1ny5A2 c.37.1.20 * 3.6e-49 30.0 %
:HMM:SCOP  350->448 1etoB_ a.4.1.12 * 9.9e-17 30.6 %
:RPS:PFM   26->113 PF00072 * Response_reg 4e-13 37.2 %
:RPS:PFM   142->304 PF00158 * Sigma54_activat 5e-37 45.4 %
:HMM:PFM   142->304 PF00158 * Sigma54_activat 9.6e-46 46.0 163/168  
:HMM:PFM   5->115 PF00072 * Response_reg 6.7e-30 35.8 109/112  
:HMM:PFM   405->443 PF02954 * HTH_8 6.3e-13 43.6 39/42  
:HMM:PFM   335->421 PF07262 * DUF1436 0.0009 20.0 85/158  
:BLT:SWISS 24->447 NTRX_AZOC5 3e-91 46.0 %
:PROS 350->359|PS00688|SIGMA54_INTERACT_3
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21759.1 GT:GENE ntrX GT:PRODUCT nitrogen assimilation regulatory protein ntrX GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 931902..933257 GB:FROM 931902 GB:TO 933257 GB:DIRECTION + GB:GENE ntrX GB:PRODUCT nitrogen assimilation regulatory protein ntrX GB:PROTEIN_ID AAZ21759.1 GB:DB_XREF GI:71062756 GB:GENE:GENE ntrX LENGTH 451 SQ:AASEQ MSTEILIIDDNADIRNIINDLIIEAGYKTRLAANYNQALNEIDKKLPDVAIIDVKLDKSDNDGLELLSHIKTKDKNIPVIIITGHANVEMAIKALKAGAFEFIEKPFNQERLLNFINRAVENLNLKNKNKEFESKLFYSYELIGVSDNFKKIKDQIDKISVSESRIFINGPTGSGKELIARKIHKESKRQKGPFVILNGALLDIKKYELELFGEEKNNGSITYGALEKSTKGILLIDEISEIPLDTQSKILRVLIDQKFRRINGSHDINVDVRIICSSSKDIKKEIKNGNFREDLYHRLNVFEINIDPLKDRVSDIPLLVEYFSEKISINYNLKKLSIDTNNKYLLNYDWPGNVRELRNLIERIAILAPDSTDKISNIIKESLKTPDIRNIPSENSLSIPLKEARENFEKEYLTTQLKKFNGNISKTADFIGMERSALHRKLKGLGIKELN GT:EXON 1|1-451:0| BL:SWS:NREP 1 BL:SWS:REP 24->447|NTRX_AZOC5|3e-91|46.0|420/454| PROS 350->359|PS00688|SIGMA54_INTERACT_3|PDOC00579| SEG 5->23|iliiddnadirniindlii| SEG 121->137|enlnlknknkefesklf| BL:PDB:NREP 1 BL:PDB:REP 24->367|3dzdA|7e-65|42.0|333/366| RP:PDB:NREP 2 RP:PDB:REP 27->386|1e32A|3e-48|12.6|350/438| RP:PDB:REP 401->448|3e7lD|8e-10|39.6|48/63| RP:PFM:NREP 2 RP:PFM:REP 26->113|PF00072|4e-13|37.2|86/111|Response_reg| RP:PFM:REP 142->304|PF00158|5e-37|45.4|163/168|Sigma54_activat| HM:PFM:NREP 4 HM:PFM:REP 142->304|PF00158|9.6e-46|46.0|163/168|Sigma54_activat| HM:PFM:REP 5->115|PF00072|6.7e-30|35.8|109/112|Response_reg| HM:PFM:REP 405->443|PF02954|6.3e-13|43.6|39/42|HTH_8| HM:PFM:REP 335->421|PF07262|0.0009|20.0|85/158|DUF1436| GO:PFM:NREP 7 GO:PFM GO:0000156|"GO:two-component response regulator activity"|PF00072|IPR001789| GO:PFM GO:0000160|"GO:two-component signal transduction system (phosphorelay)"|PF00072|IPR001789| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00072|IPR001789| GO:PFM GO:0005524|"GO:ATP binding"|PF00158|IPR002078| GO:PFM GO:0005622|"GO:intracellular"|PF00158|IPR002078| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00158|IPR002078| GO:PFM GO:0008134|"GO:transcription factor binding"|PF00158|IPR002078| RP:SCP:NREP 2 RP:SCP:REP 24->118|1a0oA|2e-13|32.3|93/128|c.23.1.1| RP:SCP:REP 89->447|1hn0A1|6e-42|9.4|342/384|a.102.3.2| HM:SCP:REP 2->187|1s8nA_|5.2e-36|34.9|175/190|c.23.1.1|1/1|CheY-like| HM:SCP:REP 141->380|1ny5A2|3.6e-49|30.0|240/247|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 350->448|1etoB_|9.9e-17|30.6|98/98|a.4.1.12|1/1|Homeodomain-like| OP:NHOMO 5901 OP:NHOMOORG 632 OP:PATTERN -----------------------------------------------1-------------------- 8MN-------11-1------------------------------------------------------------------1--63965999A27331--336356J5C651111111111111113337435775511-1----1-11---------------1---121---------------------4157777778958877687955659992693611111111O1------------------------------------------------------------------------------------------1GI2ACBBDCBD6C7-K44511216---8--5-aX8HD94EA4546112-DHG755522222B9EBC555CD67A44344443445-AAA8B9A95951966567767698CG55365BCACD35722222222A332287E11111122--111111111111111----15A99557649LLNMNLGDDDDKKNPGHFFADLNNJNKH22DFDHJ988FGCED987EBD9A992211111464KONCluTOQjXEgUeef6dfecXWjKQdfhiq*KX-111-111111111111111131--DCFBAACAKABA6FCBBBDGGHFEEHCFGEJI--2DGAJ------D79B966DBBEDCEFCD-BECCFDDCCCBCEDDCDDCBCB98766B9ABABCBBCBBCBBC9986A9A94-655676655787---4-----3333A3N9K1112111111111123345326121R9MNMNLPOMLMPNKDOLK---------68CDHEEEFEFKGHG67A88886672222--F23333331111111142--------------------------13111-1---7A2 -1------------------------------------------------------------------------------------------------------------------------------------------------------------4-----------3--3-----------1--5-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 426 STR:RPRED 94.5 SQ:SECSTR #######################ccEEEEcTTccccccEEEEEcGGGTTTccccHHHHTHTHHHHHTTccEEEETTcEEEEEETTEEEEEEEEEEccccEEEEcTTcccccccccccccTTcccTTcccGGGcccccHHHHHHHHHHHHHcHHHHHHcccccccEEEEEccTTccHHHHHHHHHHHTTcHHHEEEEEcHHHHTTTccTTHHHHHHHHHHHHHHHHHHHTccEEEEEccGGGTccHHHHcccTTHHHHHHHHHHHHHTccccccEEEEEEEccGGGccGGGTcTTcccEEEEcccccHHHHHHHHHHTTTTccccTTccHHHHHHHcTTccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccHHHHHHHcccEEEccHHHHTTcccccccccccEHHHHHHHHHTTccccccEEEEcTTccEEEEEEEEGGG## DISOP:02AL 122-141, 382-396, 448-451| PSIPRED cccEEEEEEccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHcccccccccccccHHEEccccEEEEccHHHccHHHHHHHHHHHHccEEEEccccEEEEEEEEEEEEccccHHHHHHcccccHHHHHHHccEEEEccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccHHHHHHHHHHHHHHccccEEcHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHcccccc //