[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : ntrY
DDBJ      :ntrY         nitrogen regulation protein ntrY
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  319/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.154.1a.26.1a.30.2d.122.1
:593 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   368->589 3d36B PDBj 6e-11 25.6 %
:RPS:PDB   363->591 3d36B PDBj 1e-17 20.1 %
:RPS:SCOP  324->382 1l8wA  a.154.1.1 * 6e-04 17.5 %
:RPS:SCOP  353->438 1csgA  a.26.1.2 * 1e-09 12.7 %
:RPS:SCOP  445->591 1l0oA  d.122.1.3 * 9e-07 9.0 %
:HMM:SCOP  341->442 2c2aA1 a.30.2.1 * 1.2e-09 23.6 %
:HMM:SCOP  436->591 1gkzA2 d.122.1.4 * 7.6e-23 28.5 %
:HMM:PFM   481->590 PF02518 * HATPase_c 6.2e-20 29.0 100/111  
:HMM:PFM   371->438 PF00512 * HisKA 2.7e-11 22.2 63/68  
:HMM:PFM   286->354 PF00672 * HAMP 4.7e-10 30.9 68/70  
:HMM:PFM   49->149 PF02472 * ExbD 6.8e-05 22.2 54/130  
:BLT:SWISS 113->591 NTRYL_RICCN 2e-43 33.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21758.1 GT:GENE ntrY GT:PRODUCT nitrogen regulation protein ntrY GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 930121..931902 GB:FROM 930121 GB:TO 931902 GB:DIRECTION + GB:GENE ntrY GB:PRODUCT nitrogen regulation protein ntrY GB:PROTEIN_ID AAZ21758.1 GB:DB_XREF GI:71062755 GB:GENE:GENE ntrY LENGTH 593 SQ:AASEQ MIDFIKKNIFIILVFLITLFIGFITFLTFIDKSFLKLSDDNLQLLLIGNIALLILLFFMIFSEVRNSLKIDVDVSGSKANRKYITFFALFTLIPSILISLFSLFLLSFALDKYLDKKITTAVNNSYEIAKSYTEEVRTKTQSEIILIAFDLNKSINFLNTNINQFKSFLKTQKLIRGMDEVHIIEGNGNLYLSTLEDTTLYTPPLSDALEMVQNDKRPLKIINAYKNQTASIIKLENFEGKYLYIVKYLDKKISQYLLESQEALNFYYTVLNKQTGIKISFVFIYLVIVSLLLFLSISIAIRFSSRFFRSINNLIIASSNIGKGNLDIKVPEIKTDKDMEILNQNFNLMIDKLKSQQEKIIIKERHEAWENLARKLAHEIKNPLTPIQLTIDKLKNKYSEKIADHEKEDFSKSLLIIGKQIKQIENLVNEFSDFARMPKPILKNNNLVSLIKDNVKLINELDNEIIIDFKSSKSKILLNSDSEQLSRVFFNLIKNSIESIQDKKINNVNFNGKIDISINENEEIINFIIIDNGLGFGIFKNNIKDILNPYFTTKKKGTGLGLSIVNKIINDHNGKINFISLEMGAKIEITFTK GT:EXON 1|1-593:0| BL:SWS:NREP 1 BL:SWS:REP 113->591|NTRYL_RICCN|2e-43|33.6|461/599| TM:NTM 4 TM:REGION 8->30| TM:REGION 42->64| TM:REGION 87->109| TM:REGION 275->297| SEG 9->30|ifiilvflitlfigfitfltfi| SEG 35->61|lklsddnlqllligniallillffmif| SEG 89->110|lftlipsilislfslfllsfal| SEG 281->321|fvfiylvivslllflsisiairfssrffrsinnliiassni| SEG 470->475|kssksk| SEG 514->539|idisineneeiinfiiidnglgfgif| BL:PDB:NREP 1 BL:PDB:REP 368->589|3d36B|6e-11|25.6|203/221| RP:PDB:NREP 1 RP:PDB:REP 363->591|3d36B|1e-17|20.1|214/221| HM:PFM:NREP 4 HM:PFM:REP 481->590|PF02518|6.2e-20|29.0|100/111|HATPase_c| HM:PFM:REP 371->438|PF00512|2.7e-11|22.2|63/68|HisKA| HM:PFM:REP 286->354|PF00672|4.7e-10|30.9|68/70|HAMP| HM:PFM:REP 49->149|PF02472|6.8e-05|22.2|54/130|ExbD| RP:SCP:NREP 3 RP:SCP:REP 324->382|1l8wA|6e-04|17.5|57/271|a.154.1.1| RP:SCP:REP 353->438|1csgA|1e-09|12.7|79/120|a.26.1.2| RP:SCP:REP 445->591|1l0oA|9e-07|9.0|134/141|d.122.1.3| HM:SCP:REP 341->442|2c2aA1|1.2e-09|23.6|89/0|a.30.2.1|1/1|Homodimeric domain of signal transducing histidine kinase| HM:SCP:REP 436->591|1gkzA2|7.6e-23|28.5|151/193|d.122.1.4|1/1|ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase| OP:NHOMO 400 OP:NHOMOORG 323 OP:PATTERN --------------------------------------11---------------------------3 223--------------------------------------------------------------------------------11123112--------1141112-111-----------------------11---------------11----------------------------------------11222123221222232-122112212--1----------------------------------------1---------1---------------------------------------------------1--1111111211-----1----1----------131---11--------5-111111111111111111111111111111111-11111111111-111111111111111111111111111111111111111111111111111--111111111111111----2111111111111111111111111111111111111111111111111111111111111111111111111111114441121-12111223212241143132322--------------------1----11------2-------------------1-----111-1-------------------------------------------------------1----------------------------------------------1-1-------------------------------------------------------1----------------------------1112111111-------1----------------------------1-111-------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 271 STR:RPRED 45.7 SQ:SECSTR #################################################################################################################################################################################################################################################################################################################################HTHHHHTcHHHHHHHHHHHHHHHHHHHHHHHHTTccccTTcTcEEEccccccccHHHHHHHHHHHHHHHHHHHHHcHcccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEHHHHHHHHHHHHHHHHHHTTEEEEEEccccEEEEcHHHHHHHHHHHHHHHHHTcTTcEEEEEEEEEEccEEEEEEETTEEEEEEEEccccccHHHHHHTTcTTccccGGGccccHHHHHHHHHHHTTcEEEEEETTTEEEEEEEEE# DISOP:02AL 361-363| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccEEEEEEcccEEEEEEccccccccccccHHHHHHHHccccEEccccccccEEEEEEEccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcHHHHHHHHHHHHHHHHcccEEEEEEccccEEEEEcHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEEccEEEEEEEEccccccccHHHHHHHccccEEEcccccccHHHHHHHHHHHHccEEEEEEEcccEEEEEEccc //