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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : nusA
DDBJ      :nusA         transcription termination factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  909/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
a.60.3a.60.4b.40.4d.202.1d.52.3
:517 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   11->346 1hh2P PDBj 3e-66 38.7 %
:BLT:PDB   365->419 1wclA PDBj 3e-08 41.8 %
:RPS:PDB   17->141 2coiB PDBj 3e-11 7.8 %
:RPS:PDB   132->282 2a1aA PDBj 2e-21 13.5 %
:RPS:PDB   263->348 2cxcA PDBj 1e-20 26.7 %
:RPS:PDB   360->421 1cooA PDBj 3e-06 19.4 %
:RPS:SCOP  10->135 1hh2P4  d.202.1.1 * 8e-30 37.4 %
:RPS:SCOP  141->207 1k0rA1  b.40.4.5 * 4e-18 34.3 %
:RPS:SCOP  209->285 1hh2P2  d.52.3.1 * 1e-18 46.8 %
:RPS:SCOP  286->351 1hh2P3  d.52.3.1 * 6e-07 40.9 %
:RPS:SCOP  362->421 1lb2B  a.60.3.1 * 5e-05 18.3 %
:HMM:SCOP  7->135 1hh2P4 d.202.1.1 * 2.4e-32 48.4 %
:HMM:SCOP  140->207 1k0rA1 b.40.4.5 * 5.4e-19 47.1 %
:HMM:SCOP  208->285 1hh2P2 d.52.3.1 * 1.2e-30 62.8 %
:HMM:SCOP  287->352 1k0rA3 d.52.3.1 * 1.7e-13 34.8 %
:HMM:SCOP  356->425 1b22A_ a.60.4.1 * 7.3e-13 27.1 %
:RPS:PFM   10->133 PF08529 * NusA_N 3e-22 50.4 %
:HMM:PFM   10->134 PF08529 * NusA_N 1.3e-39 49.2 122/122  
:HMM:PFM   142->200 PF00575 * S1 6.5e-09 32.2 59/74  
:HMM:PFM   324->377 PF07650 * KH_2 1.8e-05 28.9 45/59  
:HMM:PFM   415->440 PF11414 * Suppressor_APC 0.00063 26.9 26/84  
:BLT:SWISS 9->474 NUSA_RICCN e-116 46.4 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21209.1 GT:GENE nusA GT:PRODUCT transcription termination factor GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 378786..380339 GB:FROM 378786 GB:TO 380339 GB:DIRECTION + GB:GENE nusA GB:PRODUCT transcription termination factor GB:PROTEIN_ID AAZ21209.1 GB:DB_XREF GI:71062206 GB:GENE:GENE nusA LENGTH 517 SQ:AASEQ MLNRRSDKLELLRIAEAVALEKSIDKELIIDSMETGIAKAAKSKFGQDNEIKVLIDRESGDIGIFRKLIVVEKPENTNTEINLQDAIILNEANKDKKIGDEILQPLPSFDFGRIAAQTAKQVISFNVREAERERQYNDFIDKKDSILSGIVKRLEFGNVIVDLGRTEAIIQKNEMIPRENIKAGDRVKAYCYDVKREARGQQIFLSRAHPKFMEKLFVQEVPEIYDGLIEIKSSARDPGSRAKICVKAVDTSLDPVGACVGMRGSRVQAVVNELQGEKIDIVNWSEDPAIVVSNALSPAEVQRVNVDSVAKKLDVILTEENLSKAIGRRGQNVRLATKLLNYEINIMTDAEDSERRQSEFKEKTENFVKNLELDETLGQLLVAEGFSSISDIKDSSPENLMKIEGIEEDTAKALIERAKEFYQKDQEDITQRIKDLGLQDDLINHKGLTPGMLVTLGEQKILKLEDFADLASDELTGGYDVVKGERIKIQGYLEDFALSKTEADELIMSARSIIYKD GT:EXON 1|1-517:0| BL:SWS:NREP 1 BL:SWS:REP 9->474|NUSA_RICCN|e-116|46.4|463/503| BL:PDB:NREP 2 BL:PDB:REP 11->346|1hh2P|3e-66|38.7|333/344| BL:PDB:REP 365->419|1wclA|3e-08|41.8|55/76| RP:PDB:NREP 4 RP:PDB:REP 17->141|2coiB|3e-11|7.8|115/356| RP:PDB:REP 132->282|2a1aA|2e-21|13.5|148/161| RP:PDB:REP 263->348|2cxcA|1e-20|26.7|86/138| RP:PDB:REP 360->421|1cooA|3e-06|19.4|62/81| RP:PFM:NREP 1 RP:PFM:REP 10->133|PF08529|3e-22|50.4|121/122|NusA_N| HM:PFM:NREP 4 HM:PFM:REP 10->134|PF08529|1.3e-39|49.2|122/122|NusA_N| HM:PFM:REP 142->200|PF00575|6.5e-09|32.2|59/74|S1| HM:PFM:REP 324->377|PF07650|1.8e-05|28.9|45/59|KH_2| HM:PFM:REP 415->440|PF11414|0.00063|26.9|26/84|Suppressor_APC| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF08529|IPR013735| GO:PFM GO:0005515|"GO:protein binding"|PF08529|IPR013735| GO:PFM GO:0031554|"GO:regulation of transcription termination"|PF08529|IPR013735| RP:SCP:NREP 5 RP:SCP:REP 10->135|1hh2P4|8e-30|37.4|123/126|d.202.1.1| RP:SCP:REP 141->207|1k0rA1|4e-18|34.3|67/76|b.40.4.5| RP:SCP:REP 209->285|1hh2P2|1e-18|46.8|77/78|d.52.3.1| RP:SCP:REP 286->351|1hh2P3|6e-07|40.9|66/68|d.52.3.1| RP:SCP:REP 362->421|1lb2B|5e-05|18.3|60/72|a.60.3.1| HM:SCP:REP 7->135|1hh2P4|2.4e-32|48.4|126/126|d.202.1.1|1/1|Transcription factor NusA, N-terminal domain| HM:SCP:REP 140->207|1k0rA1|5.4e-19|47.1|68/0|b.40.4.5|1/2|Nucleic acid-binding proteins| HM:SCP:REP 208->285|1hh2P2|1.2e-30|62.8|78/0|d.52.3.1|1/1|Prokaryotic type KH domain (KH-domain type II)| HM:SCP:REP 287->352|1k0rA3|1.7e-13|34.8|66/67|d.52.3.1|1/1|Prokaryotic type KH domain (KH-domain type II)| HM:SCP:REP 356->425|1b22A_|7.3e-13|27.1|70/0|a.60.4.1|1/2|Rad51 N-terminal domain-like| OP:NHOMO 917 OP:NHOMOORG 916 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----1---1-111-----1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 422 STR:RPRED 81.6 SQ:SECSTR #cccccccccccccHHEEEEcTTccEEEEEcccccccHHHHHHcccHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHTTcEEEEEEEcccccGcccTcEEEccTTcccTTEEEETTEEEEcccEEEEEccccccccccccTTcEEEEEEEEEcccEEEEEETTTTTcTccEEEEEcccccTTcEEEEEEEEEETTTTEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccHHHHHHHTHHHHHHHHHHHHHHHHHHcGGGGTTcccccHHHHEccccHHHHHHHHcTTccEEEEEEETTEEEEEEEEcTTTHHHHHcGGGHHHHHHHHHHHHHHcEEEcccccccTTHHHHHHHHHHTTcTTccHHHHHHHHHTHHcccHHHHTccHHHHTTcTTccHHHHHHHHHHTTcccc############################################################################################## DISOP:02AL 1-6, 352-360, 427-440| PSIPRED ccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccEEEEEEEEEEcccccccccccHHHHHHHHHcccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEEccEEEEEEccEEEEEcHHHcccccccccccEEEEEEEEEEEcccccEEEEEEccHHHHHHHHHHccHHHHHcEEEEEEEEcccccccEEEEEEccccccEEEEEEccccHHHHHHHHHHccccEEEEEccccHHHHHHHHccccEEEEEEEcccccEEEEEEccccccEEEccccccHHHHHHHHccEEEEEEcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHcccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHcccEEEHHHHcccHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccc //