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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : opuAC
DDBJ      :opuAC        Substrate-binding region of ABC-type glycine betaine transport system
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  36/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:314 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   137->296 1r9lA PDBj 3e-04 25.3 %
:RPS:PDB   29->233 1bkaA PDBj 2e-04 12.0 %
:RPS:SCOP  37->314 1r9lA  c.94.1.1 * 4e-30 19.0 %
:HMM:SCOP  16->314 1r9lA_ c.94.1.1 * 4.9e-53 27.1 %
:RPS:PFM   31->302 PF04069 * OpuAC 3e-17 29.3 %
:HMM:PFM   29->303 PF04069 * OpuAC 3.7e-43 30.3 251/257  
:BLT:SWISS 157->243 QUEA_BRUSU 9e-04 38.1 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22105.1 GT:GENE opuAC GT:PRODUCT Substrate-binding region of ABC-type glycine betaine transport system GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1235374..1236318) GB:FROM 1235374 GB:TO 1236318 GB:DIRECTION - GB:GENE opuAC GB:PRODUCT Substrate-binding region of ABC-type glycine betaine transport system GB:PROTEIN_ID AAZ22105.1 GB:DB_XREF GI:71063102 GB:GENE:GENE opuAC LENGTH 314 SQ:AASEQ MKKIVSLMSALVISVVSFAGISNAADSKKPIVIPTHNWSSQIVMAHVIGGIFESMGNNVKYVNTDSQAVYESIRLGDVSLSHEVWESAFGKSFTTALDKGGLVDWGDHEARTLEDMGYPNWVAEKGLCPGLPDWTALKNPACAKNFTTPDSGGKGRMLEGPQTWHGDLIPQRVDALGLGDLWTVKFAGSADALWAELVAAEKEGRGTIIFNWTPNFTDGAGFTFIDFPPYTAGCRPEDGGDGKCGSPDGYLKKAVNADFPKTHPAAAATFKKMSFSTSHIGAMAALVDVDKMTHEDAAKKWLADNKSVWTPFTK GT:EXON 1|1-314:0| BL:SWS:NREP 1 BL:SWS:REP 157->243|QUEA_BRUSU|9e-04|38.1|84/363| BL:PDB:NREP 1 BL:PDB:REP 137->296|1r9lA|3e-04|25.3|158/309| RP:PDB:NREP 1 RP:PDB:REP 29->233|1bkaA|2e-04|12.0|183/688| RP:PFM:NREP 1 RP:PFM:REP 31->302|PF04069|3e-17|29.3|249/256|OpuAC| HM:PFM:NREP 1 HM:PFM:REP 29->303|PF04069|3.7e-43|30.3|251/257|OpuAC| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF04069|IPR007210| GO:PFM GO:0005488|"GO:binding"|PF04069|IPR007210| GO:PFM GO:0006810|"GO:transport"|PF04069|IPR007210| RP:SCP:NREP 1 RP:SCP:REP 37->314|1r9lA|4e-30|19.0|273/310|c.94.1.1| HM:SCP:REP 16->314|1r9lA_|4.9e-53|27.1|288/309|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 46 OP:NHOMOORG 37 OP:PATTERN -------------------------------------------------------------------- ------------------------------------------------------------21-----111--------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------11---22------122------------1-2---------------------------------------------1------1111--------------------------------------------------------------------1-------1------------------------------------------------------1---1------------------------------------------------------------------------------------------------------------------------------------------------------------1-------1132-111--111------------------------------------------------------------------------------------------------- -------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 248 STR:RPRED 79.0 SQ:SECSTR ############################ccEEEEEccHHHHHHHHHHHHHHHHTTcccEEEEEccHHHHHHHHHTTcccc####################EEEcHHHHHHHHcTTTccEEEEEEEccccEEcEEEEEEEEEccccccTTTTTcccEEEccTTcTTTTHHHHHHHHcHHHHccccTTccHHHHHHHHcccEEcTTcTTcHHHHTTccccGGGTTcccTTcTTcHcccccTTccccccccEEEEEEEEHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHTcccHHH################## DISOP:02AL 1-2| PSIPRED cHHHHHHHHHHHHHHHHHcccccccccccEEEEccccccHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHcccEEEEcccccccEEEEEEccHHHHHHHHcccccHHHHHccHHHHHcccccccccEEEEEccccccHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHHccccEEEEEccccHHccccEEEEEcccccccccccccccccccccccEEEEEEcHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHHcc //