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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : pbpA
DDBJ      :pbpA         Penicillin binding protein transpeptide
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  788/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
d.175.1e.3.1
:655 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   65->501 1mwxA PDBj 5e-33 28.6 %
:RPS:PDB   33->618 3dwkC PDBj 1e-50 13.2 %
:RPS:SCOP  54->248 1mwrA2  d.175.1.1 * 3e-28 21.9 %
:RPS:SCOP  249->653 1mwrA3  e.3.1.1 * 2e-58 24.6 %
:HMM:SCOP  53->248 1vqqA2 d.175.1.1 * 2.7e-43 31.4 %
:HMM:SCOP  249->649 1vqqA3 e.3.1.1 * 2.8e-82 37.3 %
:RPS:PFM   60->234 PF03717 * PBP_dimer 6e-14 31.2 %
:RPS:PFM   270->633 PF00905 * Transpeptidase 1e-29 33.9 %
:HMM:PFM   266->634 PF00905 * Transpeptidase 3e-68 36.6 298/304  
:HMM:PFM   61->234 PF03717 * PBP_dimer 4.2e-38 30.2 169/177  
:BLT:SWISS 4->640 PBP2_HAEIN 2e-80 31.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ22173.1 GT:GENE pbpA GT:PRODUCT Penicillin binding protein transpeptide GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(1302965..1304932) GB:FROM 1302965 GB:TO 1304932 GB:DIRECTION - GB:GENE pbpA GB:PRODUCT Penicillin binding protein transpeptide GB:PROTEIN_ID AAZ22173.1 GB:DB_XREF GI:71063170 GB:GENE:GENE pbpA LENGTH 655 SQ:AASEQ MLGEDFGVKKVQTINRRMFIISAAKIIVFTGIITRLFSLQITENKKYLTLSDKNRLREWKLPPIRGEFLDYFENVIAGNLKVYQLHVIPEEVEDFKYLMVRLKEILNISNNDFKKIIDQKNKQKPWETIIISKNLTWEQFTKVNYYLHDLVGAKPVLSVSRNYPFSESYTHVLGYVSEASEKDILNNEIIRSTHVPGLKVGKNGLEKTFEDELIGTNGIQRYEVNAYGKRISQLDHTDGLNGKTIKLTVDTEIQKFCNELLKGVAGSISIMDIYTGDIIAMQSSPSFDPNLFLFGINQDDWQLIRNNPLKPLVNKTLSGLYSPGSTFKPMVALSALENKIIDENFKVNCTGKIEMYGQTYHCWKKRGHGIVDLKSAMKQSCDTYFYEIARKLGVDRLKETSIKFGLGEKVLNETFSIEKKGLIPDTKWKKNNLGKGWVIGETLITGIGQGYTQTTPLQLCQMTAQLANGGFKIYPKIIVEEDSKTAEEIRFIMNENRRQLNKKDSGLKDTTEELLGFLDKKEHETLFKNSKNINLVREAMFASTNEVRGTSYNSRIEDPKYQFAGKTGTSQVKRITEAARELDLSTSEIPYNERDHALYIAFGPYKNPRYALSIVIEHGGSGSSAAAPIAKKLFKLIIDRHELREKQTKQNDLKI GT:EXON 1|1-655:0| BL:SWS:NREP 1 BL:SWS:REP 4->640|PBP2_HAEIN|2e-80|31.3|598/651| SEG 442->455|tlitgigqgytqtt| SEG 619->627|ggsgssaaa| BL:PDB:NREP 1 BL:PDB:REP 65->501|1mwxA|5e-33|28.6|406/635| RP:PDB:NREP 1 RP:PDB:REP 33->618|3dwkC|1e-50|13.2|485/623| RP:PFM:NREP 2 RP:PFM:REP 60->234|PF03717|6e-14|31.2|173/188|PBP_dimer| RP:PFM:REP 270->633|PF00905|1e-29|33.9|283/289|Transpeptidase| HM:PFM:NREP 2 HM:PFM:REP 266->634|PF00905|3e-68|36.6|298/304|Transpeptidase| HM:PFM:REP 61->234|PF03717|4.2e-38|30.2|169/177|PBP_dimer| GO:PFM:NREP 3 GO:PFM GO:0008658|"GO:penicillin binding"|PF03717|IPR005311| GO:PFM GO:0008658|"GO:penicillin binding"|PF00905|IPR001460| GO:PFM GO:0009273|"GO:peptidoglycan-based cell wall biogenesis"|PF00905|IPR001460| RP:SCP:NREP 2 RP:SCP:REP 54->248|1mwrA2|3e-28|21.9|187/188|d.175.1.1| RP:SCP:REP 249->653|1mwrA3|2e-58|24.6|321/330|e.3.1.1| HM:SCP:REP 53->248|1vqqA2|2.7e-43|31.4|188/0|d.175.1.1|1/1|Penicillin binding protein dimerisation domain| HM:SCP:REP 249->649|1vqqA3|2.8e-82|37.3|335/0|e.3.1.1|1/1|beta-lactamase/transpeptidase-like| OP:NHOMO 1700 OP:NHOMOORG 793 OP:PATTERN -------------------------------------------------------------------- 2222233333343223333-33332333333233332243333311231112122221222231222556211111113222311222111111111--11212112111-111111-1---1--2222222222233344---3412222222311222211211222332222222222221--11321535556569875777A97234443579422242133333365333332322333323123223211331-1-122113321211-111111----1--111-1-1---1-------------1----1----2448544444444454355355543423444234444432223555222212-2111-----1------------------------11-11-11-12-----11111111--1111121111122111111112111111111--------111111111111111111121111122222333333222223332222212333121221222222222222222222122111111111221211221221222222221222222222111132211111111111111122111112111222222222222222222222222222222221-1111211-11142224332222222222-22322222222222222224442322244444444444343444222222222322222222222222211111222222222222222222222222111111221222222233332333323331111111112232322222323322322222222222211222222221111111111--------------------------1111122222222 ------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------1--1--1-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 619 STR:RPRED 94.5 SQ:SECSTR ################################HHHTTTTTTTccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccTTcccHHHHHHHHTcccHHHHHHHHTccccTTccHHHHHHHHHGGGcHHHHcTTTcHHHHHHHHHHHHHHHHHTTcccHHHHHHHTccGGGcccccTTGGGcccccTTGGGHHHHHHHHHHHTTccTTccccHHHHTTcTcEEEEcccHHHHHHHHHHHHTEEEEEEEEETTTccEEEEEccTTccTTTccccTTcTTccTTTccEcccccccTTTccEEcGGGGHHHHTHHHHHHccccTTcEEEccccccccccccccTTcccccEEEHHHHHHTTcHHHHHHHHHHHHHHccTTHHHHHHHHTTcccHHHHHHHHHHHTccccccccHHHHTTcTTcEEccccccccEEcHHHHHHHHHHHTTTcEEEccccEEEEEcccccEEEcccccEEEcccHHHHHHHHHHHHccccEEcccccEEcccHHHHHHHHHHHHHHHTTccTTcTTTTccccccccEEEEEEEEccTTHHHHTTcHHHHccccTTEEEEEEEEEEEEEEcccEEEEEEEEETTTTTTHHHHHHHHHHHHHHHHcTTccccccHH#### DISOP:02AL 1-12, 643-655| PSIPRED cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccEEEEEEEcccccEEEEcccEEEEEEEEEEEEEEEHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHccccccEEEEEEEEEcccccccHHHEEEcccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccEEEEEEcHHHHHHHHHHHHHHccEEEEEEccccEEEEEEEccccccHHHHccccHHHHHHHHcccccHHHHHHHHccccccHHHHHHHHHHHHHccccccccEEEccEEEEEccEEcccccccccccEEHHHHHHHcccHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccccHHcccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHcccEEEccEEEEEEEcccccEEEEEccccccccccccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEEcccccEEEEEEccEEEccccccccccccccccccccccccEEEEEEcccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHccccccccccccccc //