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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : pcnB
DDBJ      :pcnB         Poly(A) Polymerase (PAP)
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  739/915 : Eukaryota  90/199 : Viruses  0/175   --->[See Alignment]
a.173.1d.218.1
:424 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   44->325 1ou5A PDBj 4e-38 36.6 %
:RPS:PDB   65->311 3bjdC PDBj 4e-24 7.0 %
:RPS:SCOP  46->165 1ou5A2  d.218.1.4 * 2e-26 42.6 %
:RPS:SCOP  168->418 1mivA1  a.173.1.1 * 6e-19 19.5 %
:HMM:SCOP  14->166 1ou5A2 d.218.1.4 * 2.9e-35 35.1 %
:HMM:SCOP  167->424 1miwA1 a.173.1.1 * 4.3e-35 20.3 %
:RPS:PFM   50->163 PF01743 * PolyA_pol 1e-14 40.5 %
:HMM:PFM   48->168 PF01743 * PolyA_pol 1.5e-30 33.9 121/126  
:HMM:PFM   202->250 PF06025 * DUF913 0.00037 24.5 49/375  
:BLT:SWISS 44->418 TRNT1_HUMAN 9e-49 34.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20928.1 GT:GENE pcnB GT:PRODUCT Poly(A) Polymerase (PAP) GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(114873..116147) GB:FROM 114873 GB:TO 116147 GB:DIRECTION - GB:GENE pcnB GB:PRODUCT Poly(A) Polymerase (PAP) GB:PROTEIN_ID AAZ20928.1 GB:DB_XREF GI:71061925 GB:GENE:GENE pcnB LENGTH 424 SQ:AASEQ MNSLLDKIFFRSQNLNHINLGFKNIKKETEVSKIFEAIHSYSSNSEIRYVGGCVRKIINKEAYDDIDLAVNLNPKEVCEALTKKDIKYYESGIEHGTITALINDIKFEITSLRKDIDTDGRHAKVEFSDSWKEDASRRDFTINSIYADIEGSLFDPFDGKKDLERGKINFIGNVETRIKEDYLRVLRYVRFFLSYSKHSHDPQVIKAIKKNLSGVSSISSERLIDEFQKLLKSNGFLKLTKDKDCLEIINLIFPQIKNISLFNKMNSFAKKNFLEMDFIFLLSLMIIDGTDNVDYFIYKFNLSKKDQKRLIFLNKFNLEKNTNQTFSEKNLNKIFYFNGREALLDVLYFKIFKSKKVDNKLIKMIEIFKKKEMPVMPFKASTLMEKYKIPEGKELGQKLKAIEEVWTSNDFKISDKELQKIVSN GT:EXON 1|1-424:0| BL:SWS:NREP 1 BL:SWS:REP 44->418|TRNT1_HUMAN|9e-49|34.4|363/434| SEG 360->373|klikmieifkkkem| BL:PDB:NREP 1 BL:PDB:REP 44->325|1ou5A|4e-38|36.6|265/344| RP:PDB:NREP 1 RP:PDB:REP 65->311|3bjdC|4e-24|7.0|229/320| RP:PFM:NREP 1 RP:PFM:REP 50->163|PF01743|1e-14|40.5|111/123|PolyA_pol| HM:PFM:NREP 2 HM:PFM:REP 48->168|PF01743|1.5e-30|33.9|121/126|PolyA_pol| HM:PFM:REP 202->250|PF06025|0.00037|24.5|49/375|DUF913| GO:PFM:NREP 3 GO:PFM GO:0003723|"GO:RNA binding"|PF01743|IPR002646| GO:PFM GO:0006396|"GO:RNA processing"|PF01743|IPR002646| GO:PFM GO:0016779|"GO:nucleotidyltransferase activity"|PF01743|IPR002646| RP:SCP:NREP 2 RP:SCP:REP 46->165|1ou5A2|2e-26|42.6|108/140|d.218.1.4| RP:SCP:REP 168->418|1mivA1|6e-19|19.5|241/265|a.173.1.1| HM:SCP:REP 14->166|1ou5A2|2.9e-35|35.1|151/152|d.218.1.4|1/1|Nucleotidyltransferase| HM:SCP:REP 167->424|1miwA1|4.3e-35|20.3|251/265|a.173.1.1|1/1|Poly A polymerase C-terminal region-like| OP:NHOMO 894 OP:NHOMOORG 830 OP:PATTERN ---------------------------------------------------1---------------- 1111111111111111111-1111111111111111111111111111111111111111111111111111111111111211-111111111--1--111111111112222222222222221--1-----1--------1-1---------------------------11111-11-------22-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111121111111111121112221111121--1111112111-12-2221111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111-11112-1-2-1-------------1---22122211-----------111111111-1--111111111111-1-------1----1-11-112-111111--1111-1-1111111111111-11111111111111111111111111111111111111111111111111111111111111111--1111111111211-11111111111111111------1----1111111111-1-111111----1---111111111111111---1111111----11-1222222111111112111111---------------------11-11-----1-1 ----1-1-1---1-----------1--11-------1---------11--11----1--111-11-----11-------------1-----------------1---1--1121122111111152111451-1111111211111111-1111111-12111111-111-1121-----1-1---11--2----11-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 298 STR:RPRED 70.3 SQ:SECSTR ###########################cHHHHHHHHHHHHHHHTccEEEEcTTTHHHHHTccccHHHHHHHHTHHHHHHHHHHHHHHTcHHHHHHHHHHHHHHcccGGGHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcGGcGcHHHHHTTTcccHHHHHHHHHcTTTTTccHHHHHHTTHHHHHHHHHHcccHHHHHHHHHHHHHHTTTTcGGGcHHHHHHHHHHHTTccccTTccccHHHHHHHHHHHHHHHcccTHHHHHTTccccHHHHHHHHHTcccHHHHHHHHHHTTccTTTTHHHHHHTTTTTccccccc################################################################################################### DISOP:02AL 1-2| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccEEEEEcHHHHHHHcccccccEEEEEcccHHHHHHHHHHHcccccEEcccccEEEEEEccEEEEEEEEEEEcccccccccEEccccHHHHHHHccccccHHHccccccEEcccHHHHHHHcccEEccccHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHccc //