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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : pdxA
DDBJ      :pdxA         4-hydroxythreonine-4-phosphate dehydrogenase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  538/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
c.77.1
:320 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   89->320 1ps6A PDBj 2e-30 33.6 %
:RPS:PDB   145->316 1cb8A PDBj 1e-22 10.8 %
:RPS:SCOP  1->316 1ps6A  c.77.1.3 * 2e-56 27.7 %
:HMM:SCOP  2->320 1r8kA_ c.77.1.3 * 1.8e-63 30.9 %
:RPS:PFM   96->316 PF04166 * PdxA 3e-37 38.9 %
:HMM:PFM   32->317 PF04166 * PdxA 9e-70 37.3 284/299  
:BLT:SWISS 6->316 PDXA_SULSY 4e-42 36.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ21530.1 GT:GENE pdxA GT:PRODUCT 4-hydroxythreonine-4-phosphate dehydrogenase GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(693358..694320) GB:FROM 693358 GB:TO 694320 GB:DIRECTION - GB:GENE pdxA GB:PRODUCT 4-hydroxythreonine-4-phosphate dehydrogenase GB:PROTEIN_ID AAZ21530.1 GB:DB_XREF GI:71062527 GB:GENE:GENE pdxA LENGTH 320 SQ:AASEQ MGKEPIIIVGGEPNSIFLEIFFKSLKTNIYKSPLIIIISKKLLQEQMKKLDFYFKINDIDKELKDFSKLTNKKINLINVDYKFKKCFEKITSKSNKYIDETFKVALNFMKQNNLSKFINGPVSKKSFLKGKTLGITEYLAKKTKKKDVAMLIFNKNLSVSPLTTHLALKDVHKKITKQKIYTQVNLINKFYKTKFNKLPRIAITGLNPHCESNFQNSEEDKVIIPAIKKLRLKNNKINGPFPADTIFTKFLLKKYDVIIGMYHDQVLSPMKALFGFDAINITLGLPFTRISPDHGPNYSMLGKNLSDPKSLIQALKFLDK GT:EXON 1|1-320:0| BL:SWS:NREP 1 BL:SWS:REP 6->316|PDXA_SULSY|4e-42|36.2|304/322| SEG 29->43|iykspliiiiskkll| SEG 227->238|ikklrlknnkin| BL:PDB:NREP 1 BL:PDB:REP 89->320|1ps6A|2e-30|33.6|232/328| RP:PDB:NREP 1 RP:PDB:REP 145->316|1cb8A|1e-22|10.8|167/674| RP:PFM:NREP 1 RP:PFM:REP 96->316|PF04166|3e-37|38.9|216/298|PdxA| HM:PFM:NREP 1 HM:PFM:REP 32->317|PF04166|9e-70|37.3|284/299|PdxA| GO:PFM:NREP 4 GO:PFM GO:0008615|"GO:pyridoxine biosynthetic process"|PF04166|IPR005255| GO:PFM GO:0050570|"GO:4-hydroxythreonine-4-phosphate dehydrogenase activity"|PF04166|IPR005255| GO:PFM GO:0051287|"GO:NAD or NADH binding"|PF04166|IPR005255| GO:PFM GO:0055114|"GO:oxidation reduction"|PF04166|IPR005255| RP:SCP:NREP 1 RP:SCP:REP 1->316|1ps6A|2e-56|27.7|314/329|c.77.1.3| HM:SCP:REP 2->320|1r8kA_|1.8e-63|30.9|317/327|c.77.1.3|1/1|Isocitrate/Isopropylmalate dehydrogenase-like| OP:NHOMO 658 OP:NHOMOORG 543 OP:PATTERN -----------------1----------------------------------------------1--- --1----------------------------------121----1-------111--------1--2---------------1111111111-111---11111111112---------------11111111111----------1-11111111111111111111111111-11111-11-------1------------------21111------1-1---------1-------------------------------------------------------------------------------------------11--11-1111-1-1---1-----1--2-11-11------11-1--11-111111111111113111111211111111111112-1111151211212221224222332111121121221121111111123211111-----------------------------112111222223332322111122121111112112122-1121111113122121111111111111111111111111111-2-1-111-111111111111111-11--1111111111111111111111111121111111111111111111111111111--1111------1-321111112122211-11111211111211111112332311121222222222222221111111111111111111111111111111111111121---3-2------11111111111111122221111111111121---------11111111111111111111111111111111-111111----------------------------------------------121 --------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------1--------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 304 STR:RPRED 95.0 SQ:SECSTR ############TTcccccccHHHHHH####HcGGGGGGccHHHHHHHHHHHHHHHHHHHHHHHHccEEccccEEEccccccccccTTcccTTHHHHHHHHHHHHHHHHHTTcccTTcccccTTcccHHHcEEEEEEcccEcccHHHHHHHHHHHHHccccTTHHHHHHHHHHHccTTcccTTccTTcccccccTTHHHHHHHHHHcTTTcTTTTcHHHHHHHHHHHHHHHHHcTccEcccccHHHHHTHHHHHHHHHHHHGGGccccccHHHHHHHHHTTccccGGGccHHHHHHHHHHHHHHTTcHHHHHHHHHccHH DISOP:02AL 1-2| PSIPRED cccccEEEEccccccccHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHccccEEEcccccHHHHHHccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEccccHHHHHHcccccHHHHHHHHHccccEEEEEEcccEEEEEEEccHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccHHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHccccEEEEEccccHHHHHHHHHcccEEEEEEcccEEEEcccccccccccccccccHHHHHHHHHHHcc //