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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : petP
DDBJ      :petP         transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  122/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:145 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   29->109 1lj9B PDBj 5e-04 19.8 %
:BLT:PDB   92->145 2rdpA PDBj 5e-05 31.5 %
:RPS:PDB   13->143 2a61A PDBj 2e-12 16.0 %
:RPS:SCOP  14->144 2bv6A1  a.4.5.28 * 6e-14 23.3 %
:HMM:SCOP  9->147 2fxaA1 a.4.5.28 * 2.6e-23 23.7 %
:RPS:PFM   45->95 PF01047 * MarR 5e-04 35.3 %
:HMM:PFM   43->96 PF01047 * MarR 3.6e-10 29.6 54/59  
:BLT:SWISS 4->144 PETP_RHOCA 2e-21 36.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20911.1 GT:GENE petP GT:PRODUCT transcriptional regulator GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 101880..102317 GB:FROM 101880 GB:TO 102317 GB:DIRECTION + GB:GENE petP GB:PRODUCT transcriptional regulator GB:NOTE MarR family (Pfam) GB:PROTEIN_ID AAZ20911.1 GB:DB_XREF GI:71061908 GB:GENE:GENE petP LENGTH 145 SQ:AASEQ MKELLYLKDTQLKQLIEKLFTSYRESFSDAKKTLDKYSIGIAHHKVLHLLSMYKGITISDLLKKLKVTKQSLNRVLKDLIKLDVVFFEKDQQDTRVKHIFLNEKGEKIFDEIFSIQKKRIYNALLNSSSDQVLNFDNVLKKIINE GT:EXON 1|1-145:0| BL:SWS:NREP 1 BL:SWS:REP 4->144|PETP_RHOCA|2e-21|36.2|141/166| BL:PDB:NREP 2 BL:PDB:REP 29->109|1lj9B|5e-04|19.8|81/142| BL:PDB:REP 92->145|2rdpA|5e-05|31.5|54/136| RP:PDB:NREP 1 RP:PDB:REP 13->143|2a61A|2e-12|16.0|131/142| RP:PFM:NREP 1 RP:PFM:REP 45->95|PF01047|5e-04|35.3|51/59|MarR| HM:PFM:NREP 1 HM:PFM:REP 43->96|PF01047|3.6e-10|29.6|54/59|MarR| GO:PFM:NREP 3 GO:PFM GO:0003700|"GO:transcription factor activity"|PF01047|IPR000835| GO:PFM GO:0005622|"GO:intracellular"|PF01047|IPR000835| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01047|IPR000835| RP:SCP:NREP 1 RP:SCP:REP 14->144|2bv6A1|6e-14|23.3|129/136|a.4.5.28| HM:SCP:REP 9->147|2fxaA1|2.6e-23|23.7|139/0|a.4.5.28|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 122 OP:NHOMOORG 122 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11111111-111111------111-------111111---111111111111111--11-----------------------1-------------------------------------------------1-------------------------------------------------1---------11111111111111111111111-11111111111-11111111111111---11-11111111111111111111111-----------------------------1--111--------------------------------------------------------1---------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 138 STR:RPRED 95.2 SQ:SECSTR #######ccccHHHHHHHHHHHHHHHHHHHHTTHHHHTccHHHHHHHHHHHHHccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEEEETTEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHH DISOP:02AL 145-146| PSIPRED ccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEcccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcc //