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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : petR
DDBJ      :petR         two-component system
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  872/915 : Eukaryota  30/199 : Viruses  0/175   --->[See Alignment]
a.4.6c.23.1
:225 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->222 2oqrA PDBj 1e-27 32.1 %
:RPS:PDB   6->221 3clmA PDBj 1e-26 7.0 %
:RPS:SCOP  8->125 1p2fA2  c.23.1.1 * 4e-26 33.0 %
:RPS:SCOP  152->222 1oddA  a.4.6.1 * 2e-13 39.4 %
:HMM:SCOP  6->183 1s8nA_ c.23.1.1 * 9.1e-34 30.5 %
:RPS:PFM   8->117 PF00072 * Response_reg 1e-18 44.5 %
:RPS:PFM   152->222 PF00486 * Trans_reg_C 1e-07 38.6 %
:HMM:PFM   8->116 PF00072 * Response_reg 4.2e-27 39.4 109/112  
:HMM:PFM   154->222 PF00486 * Trans_reg_C 1.1e-15 37.7 69/77  
:BLT:SWISS 8->221 OMPR_SHIFL 8e-39 41.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20912.1 GT:GENE petR GT:PRODUCT two-component system GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 102310..102987 GB:FROM 102310 GB:TO 102987 GB:DIRECTION + GB:GENE petR GB:PRODUCT two-component system GB:NOTE OmpR family, response regulator, ompR GB:PROTEIN_ID AAZ20912.1 GB:DB_XREF GI:71061909 GB:GENE:GENE petR LENGTH 225 SQ:AASEQ MNDFVAHILVVDDDEGIRSLIKQYLNENNFLVTTSNSAENAEEKISIIKFDLIVLDIMMTGKSGLDFIKQNKSKIDTPIILLTAKGEAENRVEGLEIGADDYLPKPFEPKELILRIKNILNKTKRNDEKRIITFDNIKIDLNKLLIIKNDIEYKINSTEKIILEKMINNPGKTFSREDIGKLTDLDKERSIDVIITRLRKKIEMDPKNPKYLQTLRGAGYVLWIE GT:EXON 1|1-225:0| BL:SWS:NREP 1 BL:SWS:REP 8->221|OMPR_SHIFL|8e-39|41.2|211/239| SEG 135->151|dnikidlnklliikndi| BL:PDB:NREP 1 BL:PDB:REP 8->222|2oqrA|1e-27|32.1|212/226| RP:PDB:NREP 1 RP:PDB:REP 6->221|3clmA|1e-26|7.0|200/348| RP:PFM:NREP 2 RP:PFM:REP 8->117|PF00072|1e-18|44.5|110/111|Response_reg| RP:PFM:REP 152->222|PF00486|1e-07|38.6|70/77|Trans_reg_C| HM:PFM:NREP 2 HM:PFM:REP 8->116|PF00072|4.2e-27|39.4|109/112|Response_reg| HM:PFM:REP 154->222|PF00486|1.1e-15|37.7|69/77|Trans_reg_C| GO:PFM:NREP 7 GO:PFM GO:0000156|"GO:two-component response regulator activity"|PF00072|IPR001789| GO:PFM GO:0000160|"GO:two-component signal transduction system (phosphorelay)"|PF00072|IPR001789| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00072|IPR001789| GO:PFM GO:0000156|"GO:two-component response regulator activity"|PF00486|IPR001867| GO:PFM GO:0000160|"GO:two-component signal transduction system (phosphorelay)"|PF00486|IPR001867| GO:PFM GO:0003677|"GO:DNA binding"|PF00486|IPR001867| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00486|IPR001867| RP:SCP:NREP 2 RP:SCP:REP 8->125|1p2fA2|4e-26|33.0|115/120|c.23.1.1| RP:SCP:REP 152->222|1oddA|2e-13|39.4|71/100|a.4.6.1| HM:SCP:REP 6->183|1s8nA_|9.1e-34|30.5|177/190|c.23.1.1|1/1|CheY-like| OP:NHOMO 12207 OP:NHOMOORG 924 OP:PATTERN ------------------------5----2-2---2--11112FG-2R-7424-1-1121-------- 8PO5B46677854597777-7B3369777776DABB7CDBB6AA55466764B9C45711GFH5E6CGGE6333354457IA6278BBKJhR-G22---47Q7GDY8XCQ111111111111112423732573C3SRRVULBEZ6iTkaSRDKLCD566998MNEEmjwK574554564544CD766441CAJVVWVWUUWIWTXYWSINFEBIVXdAAEWAHFA99A9AiZ79989887889998879996B575BC645366666CC655675686CDC866889977777787777555556666765586766476776YNNgQQQWVVWVTNFcWWADFBTLJ8BBIPB4fbQHE7768696B7437LNCFEED66656GDPPREBELNGKLCCBCCCCCB9F-KKKJJPKOCKB1UKKMLJMSTPNKKPAFCIEHHBGGDGEDDDDDDDDCBBABMCB3333333322334433344444434222235CD58ADC9GWWXWYROIIIFRRYYKJKJELXTUNSQS23ILMUHMHGVMNUO8INJFGGGH92233323A97JThGjnPABRB8QTEEK2iZhZVabJMKKNMcVHPH8886565657333322322FH8DI77NJBJJLR9JGDNKOPMHKONNNKONOOLTU--57F8E------GEEFDFBFGGGFGGHFF-GHGFFFFFFHGFFFFFFFEJHICGAA8GEGGGGGGFGGFGFGGIEDEEEFFA1EEEEFFFEDFFF--2G333336768BFcDT555534244443115FECDF9D88BIEYVYYWaadNZZcXOSST3212132129ELKQIIIIIKMNPPJLGEIEDEFE78781-U3CC88AA22222222511-------------------------5A567878777O3 ----22--------3----------------------------------------------------------1------------1-------1-221--1------2-------------------------------------------------1----2-1-------3-234--11--1737B-43229---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 224 STR:RPRED 99.6 SQ:SECSTR cccccHHHTTcccccEEEEccGGGTTccEEEEEEEcHHHHHHHHHHHHHHccTTEEEEEccHHHHHHHHHHHHTTcEEEEEEccHHHHHHHHHHHHHHHHHHHHTTcccTTccEEEEEEHHcHHHHHHHGGGccGGGTTTHHHHHHHHHHHHHHHHHHcHHHHHHHTTTccccEEEEEccHHHHHccccTTccTTHHHHHcccTTEEEHHHHHHHHHHccccEE# DISOP:02AL 1-3, 122-131| PSIPRED ccccccEEEEEEccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHcccccEEEEEccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccEEEEccEEEEcccEEEEEccEEEEccHHHHHHHHHHHHcccccccHHHHccccccccccEEEHHHHHHHHHHccccccccEEEEEEccEEEEEEc //