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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : pilA
DDBJ      :pilA         Pilin (bacterial filament)
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  1/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.24.1
:161 amino acids
:PSIPRED
:DISOPRED
:HMM:SCOP  7->79 2pilA_ d.24.1.1 * 4.4e-18 35.6 %
:HMM:PFM   5->24 PF07963 * N_methyl 2.8e-10 65.0 20/20  
:HMM:PFM   16->49 PF04391 * DUF533 0.00046 29.0 31/189  
:BLT:SWISS 36->120 GP112_HUMAN 2e-04 35.3 %
:PROS 5->25|PS00409|PROKAR_NTER_METHYL
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20879.1 GT:GENE pilA GT:PRODUCT Pilin (bacterial filament) GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(65846..66331) GB:FROM 65846 GB:TO 66331 GB:DIRECTION - GB:GENE pilA GB:PRODUCT Pilin (bacterial filament) GB:PROTEIN_ID AAZ20879.1 GB:DB_XREF GI:71061876 GB:GENE:GENE pilA LENGTH 161 SQ:AASEQ MKNNKGFTLIELLVVVAIIGILAAVGVVAYNGYTKSAKINASKSNQGAVTKYLAAEIQKCNMGTESTAMSGNLTCSGRTEALIMSGAVAALADFKNTYTPVCKGVTDGSTVPTASDGSTTCLASGKGVTTITGDDAGTITVSTQYGDDATVDVLTNAVAIE GT:EXON 1|1-161:0| BL:SWS:NREP 1 BL:SWS:REP 36->120|GP112_HUMAN|2e-04|35.3|85/100| PROS 5->25|PS00409|PROKAR_NTER_METHYL|PDOC00342| TM:NTM 1 TM:REGION 8->30| SEG 9->29|liellvvvaiigilaavgvva| SEG 128->141|vttitgddagtitv| HM:PFM:NREP 2 HM:PFM:REP 5->24|PF07963|2.8e-10|65.0|20/20|N_methyl| HM:PFM:REP 16->49|PF04391|0.00046|29.0|31/189|DUF533| HM:SCP:REP 7->79|2pilA_|4.4e-18|35.6|73/158|d.24.1.1|1/1|Pili subunits| OP:NHOMO 1 OP:NHOMOORG 1 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-5, 38-46| PSIPRED cccccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccHHHHHHHHHHHHcccccccccccccEEEcccccEEEEHHHHHHHHHHcccccHHHccccccccccccccccEEEEEccccEEEEEcccccEEEEEEccccccHHHHHHHHEEcc //