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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : pilB
DDBJ      :pilB         Type II Secretion System PilB
Swiss-Prot:             

Homologs  Archaea  27/68 : Bacteria  660/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
c.37.1d.52.10
:583 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   196->561 1p9wA PDBj 4e-65 44.4 %
:RPS:PDB   52->240 3d1tA PDBj 3e-14 7.5 %
:RPS:PDB   225->339 3cjtB PDBj 3e-15 12.1 %
:RPS:PDB   360->537 1dmaB PDBj 1e-38 8.6 %
:RPS:SCOP  6->145 2d27A1  d.52.10.1 * 6e-04 20.0 %
:RPS:SCOP  196->579 1p9rA  c.37.1.11 * e-109 42.0 %
:HMM:SCOP  173->580 1p9rA_ c.37.1.11 * 2.2e-96 32.8 %
:RPS:PFM   45->149 PF05157 * GSPII_E_N 2e-08 28.6 %
:RPS:PFM   206->468 PF00437 * GSPII_E 4e-45 43.8 %
:HMM:PFM   193->471 PF00437 * GSPII_E 5e-75 36.9 268/282  
:HMM:PFM   47->148 PF05157 * GSPII_E_N 4.6e-14 23.5 102/109  
:BLT:SWISS 39->582 TAPB_AERHY 2e-94 39.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20884.1 GT:GENE pilB GT:PRODUCT Type II Secretion System PilB GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(68744..70495) GB:FROM 68744 GB:TO 70495 GB:DIRECTION - GB:GENE pilB GB:PRODUCT Type II Secretion System PilB GB:NOTE Type IV pilus assembly protein (ATPase) PilB GB:PROTEIN_ID AAZ20884.1 GB:DB_XREF GI:71061881 GB:GENE:GENE pilB LENGTH 583 SQ:AASEQ MFKISRESEINLVNVLIDNDIISGKDLIDIKKVSTENNKSQIDAIFELKLTDEKKIIDLLIKEQNLEIIDLKSVEITEEVKTVLPSNYIKMNFVAPFKIDGKTLHMAIPDSSKLGLMRNLKAITKKNIELHAAKIGDISEYIERLSSETDEVTIASIRNENRRKTKTFETDLGDAGEVLDNKPEEDIEAIENESEVIKFSTAVVADAIKMGVSDIHIEPYRFSSRVRYRLDGMLQEQETYRQFLHDNYGAVVTRFKIMGKLDIAERRLPQDGAINFKIGNKVVDLRLSILPTANNERIVMRILNKDAGDITLEQLNFEKQDLESLRKGIHGSQGLILVTGPTGSGKSTTLYSILKEVSKPHLNILTAEDPVEYELDGVGQVQIKDDIGFTFAKALRSFLRQDPEIILVGEMRDKETVDIGLKAALTGHLVFSTLHTNDAPSTITRLQNMGTPDYLISAACQLVVAQRLARKNCKDCRVPDDDVNPKVLKDMGFSDEDASKVKAIKGKGCAKCSDSGYKGRQGIYEILVVSKPIKEAILKQATTPELREIAIKEGFRTMQDMGRRMIASGELNFREYERILSSE GT:EXON 1|1-583:0| BL:SWS:NREP 1 BL:SWS:REP 39->582|TAPB_AERHY|2e-94|39.1|519/568| SEG 184->195|eedieaienese| BL:PDB:NREP 1 BL:PDB:REP 196->561|1p9wA|4e-65|44.4|340/373| RP:PDB:NREP 3 RP:PDB:REP 52->240|3d1tA|3e-14|7.5|186/236| RP:PDB:REP 225->339|3cjtB|3e-15|12.1|107/126| RP:PDB:REP 360->537|1dmaB|1e-38|8.6|174/189| RP:PFM:NREP 2 RP:PFM:REP 45->149|PF05157|2e-08|28.6|105/107|GSPII_E_N| RP:PFM:REP 206->468|PF00437|4e-45|43.8|251/273|GSPII_E| HM:PFM:NREP 2 HM:PFM:REP 193->471|PF00437|5e-75|36.9|268/282|GSPII_E| HM:PFM:REP 47->148|PF05157|4.6e-14|23.5|102/109|GSPII_E_N| GO:PFM:NREP 5 GO:PFM GO:0005524|"GO:ATP binding"|PF05157|IPR007831| GO:PFM GO:0006810|"GO:transport"|PF05157|IPR007831| GO:PFM GO:0005524|"GO:ATP binding"|PF00437|IPR001482| GO:PFM GO:0005622|"GO:intracellular"|PF00437|IPR001482| GO:PFM GO:0006810|"GO:transport"|PF00437|IPR001482| RP:SCP:NREP 2 RP:SCP:REP 6->145|2d27A1|6e-04|20.0|135/148|d.52.10.1| RP:SCP:REP 196->579|1p9rA|e-109|42.0|367/378|c.37.1.11| HM:SCP:REP 173->580|1p9rA_|2.2e-96|32.8|399/401|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 2126 OP:NHOMOORG 693 OP:PATTERN ------1111111112-------31111-111111--------2--11-1--11-------------- 153-------------------------------------5---3---3----4--------3-----11----------3-346634-------------11---1-21111111111111111-----------11111444--6443443334431233334333333-3--2-23--2-444434423311212211111111111111112113331133111111-2111111111111111111111111111111111111-11111-1-1111111111111111111111111111111111131111111112222322222323232333333312511-3335336342332222223216583111-----221221--11--1------------112-52---21-1-----11-----1122----------1111111111121--2-----------------------------21111-32--3522246244424432444424282455511767A99667ACB796597A9D524444444542A994977567--53333-AABD988A97666975513333111111-1-------23544556655A8546555567555555555555565--34557------32341243333344434-3335355333343433443333433423222222242332322321311111-533333333733--A622222555745842111111111111111555652545256789755677444557672221122123476666656555557777A776664445--2-111111------------------------------------2212222222184 -------------------------------------------------------------------------------------------------------------1------------------------------------------------3----3------1-----------------3-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 561 STR:RPRED 96.2 SQ:SECSTR ####cccHHHHHHHHHHHTTcccHHHHHHHHHHHHHHTccHHHHHHHTTccccHHHHHHHHccccccHHHHHHHHHcHHHHTTccEEEEEEEEEEEEEEEcTTTccEEEEEEEEEEEEEETTEEEEEEEEEEEEEcHHHHHHccccccEEEE##EEEEEEEEcccccHHHHHHHHHTTccEEccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcTTEEEEEEEEEEETTcccccEccTTHHHHHHTTTccHHHHHHTHHHHHTTTcTTcEEEEETTccccTTcccccccHHHTTTccGGGEEEcccccEEEcTHHHHHHTTccccEEEEEEEHHHccHHHHHHHHHHHHHHHHHHcccccccTTcccTccHHHHHHHHHHHHTTTEEEEEEEEEEHHHHHHHHHHccccccccTTTccEEEcccHHHHTTccccccEEEEEEEEETGGEEEccccTTcHHHHHHHHHHHTccccccccEHEEEccccccccEEHHHEEcHHHHTTcEEEEccTTcccccGGGccHHHHHHTccHHHccEEEEEccccTTTHHHHHHHTHHHHH################ DISOP:02AL 1-12, 28-43, 151-169, 582-583| PSIPRED cccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHcccEEcHHHccccHHHHHcccHHHHHHccEEEEEEcccEEEEEEEccccHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccEEEEEcccccEEEEEEEccEEEEccccccccHHHHHHHHHHHHHHHcccHHHHccccccEEEEEEcccEEEEEEEEEccccccEEEEEEEccccccccHHHHcccHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHccccccEEEEEEccccccccccEEEEEcccccccHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccEEEcccccHHHHHHHcccccccccEEEEccccHHHHccccccccEEEEEEEEccHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHcccc //