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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : pilC
DDBJ      :pilC         Type II Secretion System PilC
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  492/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
:410 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   70->158 2vmbB PDBj 3e-12 30.3 %
:RPS:PDB   69->158 3c1qB PDBj 2e-12 31.0 %
:RPS:PDB   267->370 3c1qA PDBj 6e-09 25.0 %
:RPS:PFM   79->192 PF00482 * GSPII_F 3e-09 27.2 %
:RPS:PFM   282->398 PF00482 * GSPII_F 6e-11 29.1 %
:HMM:PFM   74->197 PF00482 * GSPII_F 2.4e-31 32.3 124/124  
:HMM:PFM   283->401 PF00482 * GSPII_F 6.2e-28 28.6 119/124  
:BLT:SWISS 70->409 PILC_PSEAE 8e-48 30.7 %
:PROS 169->197|PS00874|T2SP_F
:TM
:REPEAT 2|78->199|283->403
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20883.1 GT:GENE pilC GT:PRODUCT Type II Secretion System PilC GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(67509..68741) GB:FROM 67509 GB:TO 68741 GB:DIRECTION - GB:GENE pilC GB:PRODUCT Type II Secretion System PilC GB:NOTE Type IV fimbrial assembly protein, pilC GB:PROTEIN_ID AAZ20883.1 GB:DB_XREF GI:71061880 GB:GENE:GENE pilC LENGTH 410 SQ:AASEQ MEAFTYKGISEGKYVEGDIEAINLDEASHLLKEKKVIITNIIKSKKKKGEAKKKSGGSSLFGKKKVKVEEILIFSKQFATMVKAGLPILQVLIMLRDQLESPALKDIIEDIRKSLEGGVNLSKCFEKYPQYFDNIYVNLIKAGEASGKLDVFLLKIVDSLEKKEKIKKKIKGALMYPAIMFTVAITVSAFMLIKVVPVFAKMYDGMGLELPAATATIMAMSDFLSGTGGKVILFGGIGGYFGFNFIVKRNAAIRFRWHKQILKLPIFGDMILKSLLARIALILGNLSAAGVNLLESLEIAKSVSNNDVITDALESVKKGVFSGDTLTKLFLKEPLFPPTFSQLISVGEQTGQLDEMFNSVSAYYEEEFDTTVDNMSALIEPIMIVFMGVMIGGLMIAMYSPIFNVGALIN GT:EXON 1|1-410:0| BL:SWS:NREP 1 BL:SWS:REP 70->409|PILC_PSEAE|8e-48|30.7|339/374| PROS 169->197|PS00874|T2SP_F|PDOC00682| TM:NTM 3 TM:REGION 175->197| TM:REGION 270->292| TM:REGION 380->402| NREPEAT 1 REPEAT 2|78->199|283->403| SEG 34->67|kkviitniikskkkkgeakkksggsslfgkkkvk| SEG 161->171|ekkekikkkik| SEG 226->246|gtggkvilfggiggyfgfnfi| BL:PDB:NREP 1 BL:PDB:REP 70->158|2vmbB|3e-12|30.3|89/115| RP:PDB:NREP 2 RP:PDB:REP 69->158|3c1qB|2e-12|31.0|87/112| RP:PDB:REP 267->370|3c1qA|6e-09|25.0|102/111| RP:PFM:NREP 2 RP:PFM:REP 79->192|PF00482|3e-09|27.2|114/124|GSPII_F| RP:PFM:REP 282->398|PF00482|6e-11|29.1|117/124|GSPII_F| HM:PFM:NREP 2 HM:PFM:REP 74->197|PF00482|2.4e-31|32.3|124/124|GSPII_F| HM:PFM:REP 283->401|PF00482|6.2e-28|28.6|119/124|GSPII_F| OP:NHOMO 879 OP:NHOMOORG 495 OP:PATTERN -------------------------------------------------------------------- 122-------------------------------------1---1---1----1--------1-----------------2-122311-------------11---1-11111111111111111----------------111--111111111111-111112211111-1--1-11--1-1112122111-------------------------111--11-------1--------------------------------------------------------------------------------1---------11111-------2-112221111--1-1-12231-3221221111111111231111-----11-111---1--1--------------1-11---1--1-----1-------112-------------------11----1-----------------------------1-111-11---2222231222222222222213322222212254232232232321354342111111112124242333121--22111-3333333532222223211111-11111-1-------1132211322344334323333333333333333343--12223------21231122222233313-222222322223232233222222111111111111111111122211111--312222222222--12111--22222231-111-1-1111111112322212121333444323423133223211111111122333333333333333332332222222--1-111111------------------------------------11-1111111-31 -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------3-----2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 202 STR:RPRED 49.3 SQ:SECSTR ####################################################################HHHHHHHHHHHHHHHTTccHHHHHHHHHHTcccHHHHHHHHHHHHHHHTTccHHHHHTTcTTTccHHHHHHHHHHHHHTcHHHHHHHHHH############################################################################################################ccccccHHHHHHHHHHHHHHHHTTc#HHHHHHHHHHTccc#HHHHHHHHHHHHHHTTccHHHHHTTcTTTccHHHHHHHHHHHHTcHHHHHHHHHHHHHHHHHHHHHHHHHHHH############################## DISOP:02AL 44-64| PSIPRED cccEEEEEEEcccEEEEEEEcccHHHHHHHHHHcccEEEEEEEcccccccHHccHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //