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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : pilQ
DDBJ      :pilQ         Type II Secretion PilQ
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  401/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.102.1
:518 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   96->175 2a02A PDBj 1e-05 17.9 %
:RPS:SCOP  426->516 2nvpA1  a.102.1.8 * 4e-05 14.3 %
:RPS:PFM   369->518 PF00263 * Secretin 7e-16 37.8 %
:HMM:PFM   369->518 PF00263 * Secretin 1.5e-34 32.7 150/166  
:HMM:PFM   203->271 PF03958 * Secretin_N 2.4e-09 20.3 69/83  
:HMM:PFM   120->168 PF07660 * STN 4.3e-08 34.0 47/52  
:BLT:SWISS 89->518 PILQ_PSEAE 2e-45 31.3 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20885.1 GT:GENE pilQ GT:PRODUCT Type II Secretion PilQ GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(70495..72051) GB:FROM 70495 GB:TO 72051 GB:DIRECTION - GB:GENE pilQ GB:PRODUCT Type II Secretion PilQ GB:NOTE Type IV fimbrial biogenesis protein PilQ GB:PROTEIN_ID AAZ20885.1 GB:DB_XREF GI:71061882 GB:GENE:GENE pilQ LENGTH 518 SQ:AASEQ MKFKKRISFLILPFLFIFLTGCAEKFAKNTGSFKHDTPLIKTDIKKTGKLEVEKSVEMGPTPAEGDVVKLKKRKQISSVKERNYLLISEDFKSLKQNVSFKFQALDFKEAMKLMSEVGQINILVGDDVAGSISAELDNVPWDKAFNALLDLKNYAADIDVASNIIRVSTPANLTSQEGYKSARASAVKKKVELEDSVEPIISEIFRLYYITPSEAKATITELFTTVGTNGNFIPIQVTEEATTRSIIVRGKEKDLDIVDKVIREIDKRTKQVLIEAFIVEATSTFEQSLGKRLGAAYTRKSLRMGGTQGGSSVGAASGSGAALSDSTGAFTSGAGTDNLVNFGSAAATSGIGILKKTGSAVLKLELDFLEAQGLSKTVSNPKLFTLDNQQASINQGETIYIDGGEGEDKPVDASLKLIVTPNIIGDGNVMLSIQVNNDTPNRANAASVGVNKMEINTKLLVADGDIVVIGGIKKNNVANNRQGVPGTSKVPILGKVLSGKSNSDTMNELLVFIAPRIL GT:EXON 1|1-518:0| BL:SWS:NREP 1 BL:SWS:REP 89->518|PILQ_PSEAE|2e-45|31.3|415/714| TM:NTM 1 TM:REGION 7->29| SEG 9->19|flilpflfifl| SEG 180->191|ksarasavkkkv| SEG 305->329|ggtqggssvgaasgsgaalsdstga| RP:PDB:NREP 1 RP:PDB:REP 96->175|2a02A|1e-05|17.9|78/82| RP:PFM:NREP 1 RP:PFM:REP 369->518|PF00263|7e-16|37.8|148/166|Secretin| HM:PFM:NREP 3 HM:PFM:REP 369->518|PF00263|1.5e-34|32.7|150/166|Secretin| HM:PFM:REP 203->271|PF03958|2.4e-09|20.3|69/83|Secretin_N| HM:PFM:REP 120->168|PF07660|4.3e-08|34.0|47/52|STN| GO:PFM:NREP 1 GO:PFM GO:0009306|"GO:protein secretion"|PF00263|IPR004846| RP:SCP:NREP 1 RP:SCP:REP 426->516|2nvpA1|4e-05|14.3|91/426|a.102.1.8| OP:NHOMO 720 OP:NHOMOORG 403 OP:PATTERN -------------------------------------------------------------------- 1----------------------------------------------------------------------------------22211-------------11---1---11111111111111--------------------------------------------------------------11------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2----------1121111------11222-----------------1--1112----3--211111211111--11111-11111----------1------------------------------------1-1-1-211115334442333233435555243423223213352132242333421124241-11111112114112212-21--222221111211121111111421--11111111----------132111241333233223232233433331332343--12121------11231121331122222-3112232222322211222111322211111--111111111121111111--222222122121--221-1-111111211111111111111111122222121212233333223122231121111111111-2333122223433332334333332222----11----------------------------------------11---1-111-2- -------------------------------------------------------------------------------------------------------------------------------------------------------------------2------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 78 STR:RPRED 15.1 SQ:SECSTR ###############################################################################################ccEEcccccccHHHHHHHHHHHHTcEEEccTTTTTTccccccEEcHHHHHHHHHTTcccEEEEE##TTEEEEEccccccc####################################################################################################################################################################################################################################################################################################################################################### DISOP:02AL 1-4, 45-49, 51-91, 175-196, 218-236, 439-440, 442-443| PSIPRED ccHHHHHHHHHHHHHHHHHHcccEEEccccccccccccHHEEEEcccccHHHHHHHHcccccccccccccccHHHHHHHccHHcccccccHHHcccEEEEEEEcccHHHHHHHHHHHHcccEEEcccccEEEEEEEccccHHHHHHHHHHHHccEEEEEEccEEEEEccHHHHHcccccHHHHHHHHHHHHHccccccccEEEEEEEEEccHHHHHHHHHHHHHcccccccccEEEEEEEccccEEEEEEcHHHHHHHHHHHHHHccccccEEEEEEEEEEEcccHHHccEEEEEEcccccEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHcccEEEEEccEEEEEccEEEEEEEccEEEEEEEEEEEEEEEEEEEEEEEEEEccccEEEEEEEEEEcccccccccccEEEEEEEEEEEEEccccEEEEEEEEEEccccccccccEEEcccEEEEEcccccccccEEEEEEEEEEEEc //