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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : pilT
DDBJ      :pilT         Type II Secretion PilT
Swiss-Prot:             

Homologs  Archaea  40/68 : Bacteria  657/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:337 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   16->329 2ewvA PDBj 2e-69 47.6 %
:RPS:PDB   108->142 2akaA PDBj 7e-05 28.6 %
:RPS:PDB   121->165 3cgiD PDBj 2e-06 15.9 %
:RPS:PDB   153->298 1dmaB PDBj 2e-26 9.1 %
:RPS:SCOP  16->330 1p9rA  c.37.1.11 * 7e-50 32.1 %
:HMM:SCOP  16->338 1p9rA_ c.37.1.11 * 1e-65 28.6 %
:RPS:PFM   16->268 PF00437 * GSPII_E 6e-40 41.1 %
:HMM:PFM   11->264 PF00437 * GSPII_E 2.6e-47 30.0 250/282  
:BLT:SWISS 24->335 PILT_NEIGO 4e-79 47.1 %
:PROS 192->206|PS00662|T2SP_E
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20898.1 GT:GENE pilT GT:PRODUCT Type II Secretion PilT GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION complement(88721..89734) GB:FROM 88721 GB:TO 89734 GB:DIRECTION - GB:GENE pilT GB:PRODUCT Type II Secretion PilT GB:NOTE Type IV pilus retraction ATPase PilT GB:PROTEIN_ID AAZ20898.1 GB:DB_XREF GI:71061895 GB:GENE:GENE pilT LENGTH 337 SQ:AASEQ MFEKLEELAKNNKKISDFHIRTGWPLAFRQTGEIHKIQEIVVKEQDLQDLISTNCNETEMKKFSETHELDSSVTLSGLRFRANFYKTIQGPAAVLRRVESVIPEMDQFDLPQVLYDIVDMHKGLVLVTGPTGSGKSTTLAAIVNEINKTRTSNIITVEDPVEFIHKDLKSIVSHREVGKQTKTFSSALKAALREDPDVILVGEMRDLETVSLALTAAETGHLVFGTLHTSGAPNTINRIIDVFPPEQQAQIRAQISSSLKMVVTQRLLKTKDGQGRCAAFEVMKCTPPIQNLIREAKIHQIPSIMQTSVRDGMITMTKSLEELVKAGKIDASAGRED GT:EXON 1|1-337:0| BL:SWS:NREP 1 BL:SWS:REP 24->335|PILT_NEIGO|4e-79|47.1|312/374| PROS 192->206|PS00662|T2SP_E|PDOC00567| SEG 3->14|ekleelaknnkk| SEG 247->258|qqaqiraqisss| BL:PDB:NREP 1 BL:PDB:REP 16->329|2ewvA|2e-69|47.6|307/343| RP:PDB:NREP 3 RP:PDB:REP 108->142|2akaA|7e-05|28.6|35/764| RP:PDB:REP 121->165|3cgiD|2e-06|15.9|44/117| RP:PDB:REP 153->298|1dmaB|2e-26|9.1|143/189| RP:PFM:NREP 1 RP:PFM:REP 16->268|PF00437|6e-40|41.1|246/273|GSPII_E| HM:PFM:NREP 1 HM:PFM:REP 11->264|PF00437|2.6e-47|30.0|250/282|GSPII_E| GO:PFM:NREP 3 GO:PFM GO:0005524|"GO:ATP binding"|PF00437|IPR001482| GO:PFM GO:0005622|"GO:intracellular"|PF00437|IPR001482| GO:PFM GO:0006810|"GO:transport"|PF00437|IPR001482| RP:SCP:NREP 1 RP:SCP:REP 16->330|1p9rA|7e-50|32.1|299/378|c.37.1.11| HM:SCP:REP 16->338|1p9rA_|1e-65|28.6|308/401|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 2107 OP:NHOMOORG 702 OP:PATTERN 11----2122222213-------31222-222-11111----112-11--112-1111121------- 153----1--------------------------------5---3---3----3--------3---------------1-3-346634-------------11---1-21111111111111111-----------1----444--6333333334431233333333333-3--2-23--2-444434422311111111111111-11111111113331133111111-21111111111111111111111-1111111111111-11111-1-1111111111111111111111111111111111131111111112222222222223232333333312411-3335336342332222222216571111-----211221---1--1------------111-51---1--1--1--1------1122----------1111111111121--2-----------------------------2-111-22--2422246244423322444424252455511657A996679CA79659799D524444444542A993977567--53333-AACD987996666975513333111111-111111112454443665598546555567555555555555565--34558------32341243333344434-333535533334343344333333342322222224233232232131111--533333343833--A622222555745831111111111111111555652545256799755677444557672221122123477666656555557777A776664445--2-111111------------------------------------2212222222184 --------------------------------------------------------------------------------------------------------------------------------------------------------------2----3------1-----------------2-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 314 STR:RPRED 93.2 SQ:SECSTR ###############cEEEEccccccEEEETTEEEEcTTccccccTTHHHHHTTcccTTTTHHHHccEEEEEEEccccHHHHTTTccGGGEEEcccccEEEcTHHHHHHHHTTcccccEEEEEEEHHHccHHHHHHHHHHHHHHHHHTTcccccccTTcccTccHHHHccHHHHHHHHTTTcEEEEEEEEEEHHHHHHHHHHccccccccTTTccEEEcccHHHHTTccccccEEEEEEEEETTcGGGEEEccccTTcHHHHHHHHHHHTccccccccEEEEccccccccEEEEcHHHHHHHHHcccHHHHTccccHHHHHHTTTTccc######## PSIPRED cccHHHHHHHHcccccEEEEEcccEEEEEEccEEEEcccccccHHHHHHHHHHHHcHHHcccccccccEEEEEccccEEEEEEEcccccccEEEEEEcccccccHHHccHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHccccccEEEEEEcccHHHccccccEEEEccccccccccHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHccccHHHHHHHHHHHHEEEEEEEEEEEcccccEEEEEEEEEcccHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHcc //