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Candidatus Pelagibacter ubique HTCC1062 (pubi0)
Gene : pild
DDBJ      :pild         Type II Secretion PilD
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  429/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
:254 amino acids
:PSIPRED
:RPS:PFM   8->94 PF06750 * DiS_P_DiS 8e-18 48.3 %
:RPS:PFM   101->215 PF01478 * Peptidase_A24 3e-08 31.1 %
:HMM:PFM   8->92 PF06750 * DiS_P_DiS 3.1e-32 48.2 85/92  
:HMM:PFM   101->212 PF01478 * Peptidase_A24 6.1e-27 34.0 103/106  
:BLT:SWISS 25->253 LEP4_XANCP 8e-29 36.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ20890.1 GT:GENE pild GT:PRODUCT Type II Secretion PilD GT:DATABASE GIB00256CH01 GT:ORG pubi0 GB:ACCESSION GIB00256CH01 GB:LOCATION 78561..79325 GB:FROM 78561 GB:TO 79325 GB:DIRECTION + GB:GENE pild GB:PRODUCT Type II Secretion PilD GB:NOTE Type IV Prepilin Peptidase A24A GB:PROTEIN_ID AAZ20890.1 GB:DB_XREF GI:71061887 GB:GENE:GENE pild LENGTH 254 SQ:AASEQ MLYLIAFIFGSIWGSFSNVCIHRIPDDISVVTGRSHCPSCKTLIKWHDNIPLFSYLFLKAKCRGCSAKINIKYFLVELISAINFVVIFHFFGVSLTTLLFFILSICFVIIFFIDLKHFIIPNELTYPLMIIGLLKSFDPNLNTTLFPNLVNSLIGGLFGYIIIWLIIFIYKKLRNKEGMGLGDAKLLSVIGFWFGWASIPFVIFFSSVIALLSVVPDIIKNKKDLSSQIPFGPYLIIGNLVFLIFNEQIRLFLN GT:EXON 1|1-254:0| BL:SWS:NREP 1 BL:SWS:REP 25->253|LEP4_XANCP|8e-29|36.6|224/287| TM:NTM 6 TM:REGION 1->23| TM:REGION 72->94| TM:REGION 98->120| TM:REGION 149->170| TM:REGION 189->211| TM:REGION 229->251| SEG 153->170|ligglfgyiiiwliifiy| RP:PFM:NREP 2 RP:PFM:REP 8->94|PF06750|8e-18|48.3|87/95|DiS_P_DiS| RP:PFM:REP 101->215|PF01478|3e-08|31.1|106/107|Peptidase_A24| HM:PFM:NREP 2 HM:PFM:REP 8->92|PF06750|3.1e-32|48.2|85/92|DiS_P_DiS| HM:PFM:REP 101->212|PF01478|6.1e-27|34.0|103/106|Peptidase_A24| GO:PFM:NREP 2 GO:PFM GO:0004190|"GO:aspartic-type endopeptidase activity"|PF01478|IPR000045| GO:PFM GO:0016020|"GO:membrane"|PF01478|IPR000045| OP:NHOMO 457 OP:NHOMOORG 432 OP:PATTERN -------------------------------------------------------------------- 111-------------------------------------1---1---1-------------1-----------------1--11111-----------------------------------------------------111--111111111--1--11111111111-1--1-11--1-11111111111111111111111111--11111111-111111---1--1-111-1111111111------1-----------11--1-----111-------111------------------------21111-111-11111111111111111111111111---1111112111111111111--111111---------------1---------------------------------------------------------------------------------------------------1-----------1111-11111--111--1111--11-1--111-111111111111--111-111111111111111111111--11111-11111111211111111-111111---1---------1111111-1-11111111-1111111111111-1111--1111-------2------122-111121-2-12231222212111112----11------------------1-----1---211111111111--111111111111111----------------11111111111111111-1211111111111111111111111222221111111111111111111--1-------------------------------------------11-1111111-11 --------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------1-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHcccccEEccccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcHHHHHHcc //